Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6I50_RS07640 Genome accession   NZ_CP068195
Coordinates   1565721..1566947 (-) Length   408 a.a.
NCBI ID   WP_004692713.1    Uniprot ID   A0A1T1JPM5
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1560721..1571947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS07615 (I6I50_07615) - 1562076..1562399 (+) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -
  I6I50_RS07620 (I6I50_07620) rlmB 1562542..1563291 (+) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6I50_RS07625 (I6I50_07625) - 1563324..1564241 (+) 918 WP_201707084.1 DMT family transporter -
  I6I50_RS07630 (I6I50_07630) coaE 1564255..1564854 (-) 600 WP_201707085.1 dephospho-CoA kinase -
  I6I50_RS07635 (I6I50_07635) pilD 1564861..1565721 (-) 861 WP_201707086.1 A24 family peptidase Machinery gene
  I6I50_RS07640 (I6I50_07640) pilC 1565721..1566947 (-) 1227 WP_004692713.1 type II secretion system F family protein Machinery gene
  I6I50_RS07645 (I6I50_07645) pilB 1566978..1568690 (-) 1713 WP_087011197.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6I50_RS07650 (I6I50_07650) tpiA 1568970..1569761 (+) 792 WP_195728536.1 triose-phosphate isomerase -
  I6I50_RS07655 (I6I50_07655) secG 1569775..1570104 (+) 330 WP_004692710.1 preprotein translocase subunit SecG -
  I6I50_RS07685 (I6I50_07685) rimP 1571058..1571582 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44818.28 Da        Isoelectric Point: 9.8660

>NTDB_id=527944 I6I50_RS07640 WP_004692713.1 1565721..1566947(-) (pilC) [Acinetobacter johnsonii strain FDAARGOS_1093]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=527944 I6I50_RS07640 WP_004692713.1 1565721..1566947(-) (pilC) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTCGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGGATAATGAAGAAAAAAGTGACCACACTGGACATCACAATTTTCACTCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCGCTGGTTCAAGGTTTTGAAATTGTGGCTGAAGGCCTAGAAAACCCATCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAAGGCGGTAATACCTTTGCGGGAGCACTCAAAAAATATCCGCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAATTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCAGTGATCGT
GACCATTATTTTGATGGTCAAAGTTGTGCCTGTTTTCCAAGATTTATTCAGCTCTTTTGGTGCAGACTTACCTGCATTCA
CTAAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTGGTGATTACC
GCTTTACTCGAAACCAAAAAGCGGAGTAAAAAGTTTCGTGACATGCTGGATAAAGCTGCACTGAAAGCCCCGATTTTTGG
TGATTTAGTCTATAAAGCAATTATCGCGCGCTATAGCCGCACCCTCTCTACAACCTTTGCTGCGGGTGTACCCTTAATTG
ATGCCCTCGAGTCTACAGCAGGTGCAACCAATAACGTGGTCTATGAAGAAGCAGTGATGAAAATCCGCGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCGATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGCTGGATAAAGTTGCCACTCACTATGAAAACGAAGTCGATAATGCGGTGGATGGTT
TAACTGCAATGATGGAGCCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTAATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1JPM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

61.728

99.265

0.613
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.417
  pilC Thermus thermophilus HB27

36.908

98.284

0.363