Detailed information NTG0527943

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6I50_RS07635
• Genome accession: NZ_CP068195
• Coordinates: 1564861..1565721 (-)
• Length: 286 a.a.
• NCBI ID: WP_201707086.1
• Uniprot ID: A0AA42XG73
• Organism: Acinetobacter johnsonii strain FDAARGOS_1093
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1559861..1570721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I50_RS07610 (I6I50_07610)	recN	1560023..1561684 (-)	1662	WP_201707083.1	DNA repair protein RecN	-
I6I50_RS07615 (I6I50_07615)	-	1562076..1562399 (+)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
I6I50_RS07620 (I6I50_07620)	rlmB	1562542..1563291 (+)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6I50_RS07625 (I6I50_07625)	-	1563324..1564241 (+)	918	WP_201707084.1	DMT family transporter	-
I6I50_RS07630 (I6I50_07630)	coaE	1564255..1564854 (-)	600	WP_201707085.1	dephospho-CoA kinase	-
I6I50_RS07635 (I6I50_07635)	pilD	1564861..1565721 (-)	861	WP_201707086.1	A24 family peptidase	Machinery gene
I6I50_RS07640 (I6I50_07640)	pilC	1565721..1566947 (-)	1227	WP_004692713.1	type II secretion system F family protein	Machinery gene
I6I50_RS07645 (I6I50_07645)	pilB	1566978..1568690 (-)	1713	WP_087011197.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6I50_RS07650 (I6I50_07650)	tpiA	1568970..1569761 (+)	792	WP_195728536.1	triose-phosphate isomerase	-
I6I50_RS07655 (I6I50_07655)	secG	1569775..1570104 (+)	330	WP_004692710.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31984.45 Da
• Isoelectric Point: 8.2650

>NTDB_id=527943 I6I50_RS07635 WP_201707086.1 1564861..1565721(-) (pilD) [Acinetobacter johnsonii strain FDAARGOS_1093]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA
IHWYQNIPVMSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAALGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEKIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=527943 I6I50_RS07635 WP_201707086.1 1564861..1565721(-) (pilD) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTGTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTGAATGTGGTGATCTATCGCACTCCAAAAATGATGGAACAAGAATGGCGTACCGATTGCCAACTTCTGCTTC
ATCCTGAGCAGCCAATTATTGATGAAACGAAGCTCACATTGAGTAAGCCTGCCTCAACCTGTCCAAAATGTAAAAGTGCC
ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTCCTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCTTTGGTCGTGGTTGCAGTATTTGGCCCAACAATCCAAA
TGCTGTTCGGTCTCGTGCTCACTTATATTTTAATCGCCTTAACCTTTATTGATTTTGACACTCAGCTTTTACCTGATCGC
TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCGACAGCGGCCATTTGGGG
TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGCAAGGAAGGTATGGGTTATG
GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC
GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAACCTTTTGCTTTTGGCCCATATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGTGAGAAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.021	100	0.79
pilD	Acinetobacter baumannii D1279779	79.298	99.65	0.79
pilD	Vibrio cholerae strain A1552	54.104	93.706	0.507
pilD	Vibrio campbellii strain DS40M4	51.311	93.357	0.479
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437