Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6I50_RS04015 Genome accession   NZ_CP068195
Coordinates   794756..796834 (-) Length   692 a.a.
NCBI ID   WP_159151545.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 789756..801834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS04000 (I6I50_04000) - 792222..793061 (-) 840 WP_201706858.1 hypothetical protein -
  I6I50_RS04005 (I6I50_04005) aroB 793069..794154 (-) 1086 WP_201706859.1 3-dehydroquinate synthase -
  I6I50_RS04010 (I6I50_04010) - 794185..794667 (-) 483 WP_249303512.1 shikimate kinase -
  I6I50_RS04015 (I6I50_04015) pilQ 794756..796834 (-) 2079 WP_159151545.1 type IV pilus secretin PilQ Machinery gene
  I6I50_RS04020 (I6I50_04020) pilP 796854..797381 (-) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  I6I50_RS04025 (I6I50_04025) pilO 797381..798103 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I50_RS04030 (I6I50_04030) pilN 798100..798756 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  I6I50_RS04035 (I6I50_04035) pilM 798756..799814 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75074.18 Da        Isoelectric Point: 5.1275

>NTDB_id=527928 I6I50_RS04015 WP_159151545.1 794756..796834(-) (pilQ) [Acinetobacter johnsonii strain FDAARGOS_1093]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSVNPALATPVAAARSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEDDEAKAIAQSIKLAPIQTDYIQLSYAKAADILKLLEDSRNSKGA
ASNGTAGTDSLALESLLSSRGSVVADLRTNTLIVNDTSQNIDKIRRMIDLLDVAVKQVMVEARIVTAQTDFSRELGIRWS
AQKLNNNPVWGGDFQPSFDLGVDLATGTAGTFNFGLLKISDYMLNLELTALQADGHGEVLSAPKVLTGDKQKAYILRGDQ
IPYQTWSADTGTTTSFVDANLKLEVTPSITPDGRVQMSLKIEKDTVGTLTSAGYLINTNELETNVLVDDGETVVLGGIFD
DIKQNQYEKVPFFGDLPVVGALFKNNTKSSAQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=527928 I6I50_RS04015 WP_159151545.1 794756..796834(-) (pilQ) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCTTAAAACAAGGCAGCATTGCGGTGGCAACGGCTGAAGCAAGTACAGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCCGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGTGAACCCAGCGCTAGCAACACCTGTTGCTGCAGCGCGTTCAGAGCAAGGTATTTCA
AATATTGGATTCCAACGTGGTTCAGACGGTGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAACAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCGCGCCGTCTCAATGTGA
ATGATTTCGCAACGCCTGTATCGACCATCGATGCACAAAACGATGGCAGTAACGGCCTGATCACGATCCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCTGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
GCCTAAAGCACCAAGTGCTTATACAGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTACGCCGTGTATTACAGC
TCTTGGCTGATTTTACAGGCATTAACATGGTGGCTTCTGACACTGTACAAGGTAATATTACCTTGCGCCTGAAGGATGTT
CCGTGGGATCAGGCGCTTGATATCATTATGAAAACCAAGAACTTGGATAAACGACGTAATGGTAATGTAATTTGGATTGC
TCCTGTAGCTGAACTGATCAAATCTGAGGATGATGAAGCTAAAGCCATTGCACAAAGTATTAAACTTGCACCGATTCAAA
CCGATTATATTCAGTTGAGCTATGCGAAAGCTGCTGATATTTTAAAATTGCTAGAAGATTCTCGAAATAGCAAAGGGGCG
GCATCCAACGGTACGGCTGGCACAGATTCACTAGCTTTAGAAAGCTTATTGAGTTCACGCGGTAGTGTGGTTGCCGATTT
ACGAACCAATACTTTAATCGTAAACGACACATCGCAGAACATTGATAAGATCCGCCGGATGATTGACTTACTTGATGTTG
CAGTGAAACAGGTGATGGTTGAAGCCCGTATTGTAACTGCACAAACAGATTTCTCTCGCGAATTGGGAATTCGTTGGAGT
GCGCAAAAACTCAATAACAATCCTGTGTGGGGTGGGGATTTCCAACCGAGTTTTGATTTAGGAGTAGATTTGGCAACGGG
TACGGCGGGAACGTTTAACTTTGGTTTGTTAAAAATCTCAGACTATATGTTGAATCTTGAGTTAACTGCGCTACAAGCAG
ATGGTCATGGTGAAGTTTTGTCGGCGCCTAAAGTACTTACTGGTGATAAACAGAAAGCCTATATTCTACGTGGAGATCAA
ATTCCTTATCAAACGTGGAGTGCGGATACAGGAACAACAACTAGTTTTGTTGATGCGAATTTGAAGTTGGAAGTCACGCC
AAGTATTACACCTGATGGTCGCGTACAAATGTCGCTAAAAATTGAAAAAGATACAGTTGGTACACTAACATCAGCAGGGT
ATTTAATTAATACAAATGAACTTGAAACTAATGTTTTGGTTGATGATGGTGAAACAGTCGTACTTGGCGGTATTTTTGAT
GACATTAAGCAAAATCAATATGAGAAAGTTCCATTTTTTGGGGATTTACCTGTAGTGGGTGCTTTATTTAAAAATAACAC
CAAATCTAGTGCGCAAACTGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

Secretin and TonB N terminus short domain (STN)

(305-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

65.928

100

0.688
  pilQ Acinetobacter baumannii strain A118

65.789

100

0.686
  comQ Acinetobacter baylyi ADP1

63.01

100

0.647
  pilQ Pseudomonas aeruginosa PAK

39.768

99.566

0.396
  pilQ Legionella pneumophila strain Lp02

37.736

99.566

0.376
  pilQ Legionella pneumophila strain ERS1305867

38.018

97.688

0.371