Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6I50_RS04030 Genome accession   NZ_CP068195
Coordinates   798100..798756 (-) Length   218 a.a.
NCBI ID   WP_004691498.1    Uniprot ID   A0A380U6M1
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 793100..803756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS04010 (I6I50_04010) - 794185..794667 (-) 483 WP_249303512.1 shikimate kinase -
  I6I50_RS04015 (I6I50_04015) pilQ 794756..796834 (-) 2079 WP_159151545.1 type IV pilus secretin PilQ Machinery gene
  I6I50_RS04020 (I6I50_04020) pilP 796854..797381 (-) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  I6I50_RS04025 (I6I50_04025) pilO 797381..798103 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I50_RS04030 (I6I50_04030) pilN 798100..798756 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  I6I50_RS04035 (I6I50_04035) pilM 798756..799814 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene
  I6I50_RS04040 (I6I50_04040) ponA 799980..802508 (+) 2529 WP_201706860.1 penicillin-binding protein PBP1a -
  I6I50_RS04045 (I6I50_04045) - 802540..803346 (-) 807 WP_201706861.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 24225.67 Da        Isoelectric Point: 5.4468

>NTDB_id=527931 I6I50_RS04030 WP_004691498.1 798100..798756(-) (pilN) [Acinetobacter johnsonii strain FDAARGOS_1093]
MAKINLLPWRDALREKRKKEFIAYCVGAALVGVLAVALAWFFYSQKLEDQEQANQLVVSTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQGQRPVAVRLVDEMVRVTPSNMYITKFVRTGDKFTIEGKAESPNTVAEFLRNLEASAWYRNAFMNSFLV
AEEKKDKAPSSIVPRVEETYGTFVVTADLDEIAQPVAPNATTPEAASTVNNSTAGAAQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=527931 I6I50_RS04030 WP_004691498.1 798100..798756(-) (pilN) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGGCAAAAATAAACCTACTCCCTTGGCGTGATGCGTTAAGAGAGAAACGAAAAAAAGAATTTATTGCCTATTGTGTTGG
GGCTGCATTAGTTGGGGTTTTAGCTGTTGCTTTGGCTTGGTTCTTTTACAGTCAAAAACTTGAAGATCAAGAACAAGCCA
ATCAGTTGGTGGTGAGTACCAATCAAAACTTAGATGTCCAATTAAAGTCGTTGGAAGGTCTGCAAGAGCAGCGCAATGCG
ATTGTTGAACGGATGAAGCTGATCCAAGGTTTGCAAGGTCAACGTCCTGTGGCTGTGCGTTTGGTCGATGAAATGGTACG
TGTCACACCAAGTAATATGTACATTACTAAGTTTGTGCGTACGGGTGATAAATTTACCATTGAAGGGAAAGCGGAAAGCC
CGAATACGGTTGCGGAATTCTTAAGAAATCTCGAAGCATCGGCGTGGTATCGCAATGCCTTTATGAATTCCTTTTTGGTT
GCTGAAGAGAAAAAAGATAAAGCACCAAGTTCCATCGTGCCACGTGTTGAAGAAACCTATGGCACCTTTGTGGTTACGGC
AGATTTAGATGAGATTGCACAGCCAGTAGCGCCTAATGCGACGACACCTGAAGCCGCAAGTACAGTTAATAATTCAACAG
CGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U6M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

69.378

95.872

0.665
  comN Acinetobacter baylyi ADP1

73.604

90.367

0.665