Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6I50_RS04020 Genome accession   NZ_CP068195
Coordinates   796854..797381 (-) Length   175 a.a.
NCBI ID   WP_094148569.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 791854..802381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS04000 (I6I50_04000) - 792222..793061 (-) 840 WP_201706858.1 hypothetical protein -
  I6I50_RS04005 (I6I50_04005) aroB 793069..794154 (-) 1086 WP_201706859.1 3-dehydroquinate synthase -
  I6I50_RS04010 (I6I50_04010) - 794185..794667 (-) 483 WP_249303512.1 shikimate kinase -
  I6I50_RS04015 (I6I50_04015) pilQ 794756..796834 (-) 2079 WP_159151545.1 type IV pilus secretin PilQ Machinery gene
  I6I50_RS04020 (I6I50_04020) pilP 796854..797381 (-) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  I6I50_RS04025 (I6I50_04025) pilO 797381..798103 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I50_RS04030 (I6I50_04030) pilN 798100..798756 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  I6I50_RS04035 (I6I50_04035) pilM 798756..799814 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.56 Da        Isoelectric Point: 7.1331

>NTDB_id=527929 I6I50_RS04020 WP_094148569.1 796854..797381(-) (pilP) [Acinetobacter johnsonii strain FDAARGOS_1093]
MKYQNLMLSLCVGLFLVGCDSRIDAVNMQMAEIRNQPPLPIEPAPDFPPVPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLSRQLQPLESYAIESLNMKGSMRGQNGQILALIQTPDGEIERVQRGSYLGMNHGRVINITATQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=527929 I6I50_RS04020 WP_094148569.1 796854..797381(-) (pilP) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGAAATATCAAAATCTCATGCTTAGTCTCTGCGTAGGACTATTCCTTGTCGGTTGTGATTCACGTATTGATGCGGTCAA
TATGCAAATGGCTGAAATTCGCAATCAGCCACCATTGCCGATTGAGCCTGCGCCAGATTTTCCACCTGTCCCGACTTTTA
ATTATGCTGCACATCAATTAAAGAGCCCGTTTATGCCAAGCTCATTAGCGGCCGAACTGAAAATTATGGCTGGAAAGCGT
GTTTATCCAAACTTATCTCGCCAATTACAACCCTTGGAAAGTTATGCGATTGAATCGCTTAACATGAAAGGCAGCATGCG
TGGACAAAATGGACAAATTTTGGCGTTGATTCAAACCCCTGATGGTGAAATTGAACGCGTGCAGCGTGGTAGTTATTTGG
GGATGAATCATGGTCGTGTGATTAATATCACCGCTACACAAATTGATTTGATTGAAATTATTCCGGATGGGCGTGAGGGC
TATGTCGAGCGCCCGAGAAGCCTAGTATTAATTGGGCCGGCGCCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(29-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.771
  comL Acinetobacter baylyi ADP1

71.429

100

0.714