Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6I50_RS04025 Genome accession   NZ_CP068195
Coordinates   797381..798103 (-) Length   240 a.a.
NCBI ID   WP_004691497.1    Uniprot ID   A0A380U8X3
Organism   Acinetobacter johnsonii strain FDAARGOS_1093     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 792381..803103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I50_RS04005 (I6I50_04005) aroB 793069..794154 (-) 1086 WP_201706859.1 3-dehydroquinate synthase -
  I6I50_RS04010 (I6I50_04010) - 794185..794667 (-) 483 WP_249303512.1 shikimate kinase -
  I6I50_RS04015 (I6I50_04015) pilQ 794756..796834 (-) 2079 WP_159151545.1 type IV pilus secretin PilQ Machinery gene
  I6I50_RS04020 (I6I50_04020) pilP 796854..797381 (-) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  I6I50_RS04025 (I6I50_04025) pilO 797381..798103 (-) 723 WP_004691497.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I50_RS04030 (I6I50_04030) pilN 798100..798756 (-) 657 WP_004691498.1 PilN domain-containing protein Machinery gene
  I6I50_RS04035 (I6I50_04035) pilM 798756..799814 (-) 1059 WP_004978085.1 pilus assembly protein PilM Machinery gene
  I6I50_RS04040 (I6I50_04040) ponA 799980..802508 (+) 2529 WP_201706860.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27004.43 Da        Isoelectric Point: 4.9937

>NTDB_id=527930 I6I50_RS04025 WP_004691497.1 797381..798103(-) (pilO) [Acinetobacter johnsonii strain FDAARGOS_1093]
MSRDEFEELTSENHAVTKKKMTVDKFFQQFNTLDPNNYGSWPFSVKLTCWIFIILVIGALGYFVVIKPKLDAISNAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVSGVNSGLKFKNIRLEPEIRQEFFIEQP
ISIEATGDYHSFGSFVSGIAALPRIVTLHDFDISASSNNEKKTDIPQISYSVKAKTYRYVGATAAASVENTAKADAGGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=527930 I6I50_RS04025 WP_004691497.1 797381..798103(-) (pilO) [Acinetobacter johnsonii strain FDAARGOS_1093]
ATGAGTCGCGATGAATTTGAAGAATTAACATCAGAAAACCATGCTGTAACTAAGAAGAAAATGACGGTTGATAAGTTTTT
TCAACAGTTCAATACTTTGGATCCCAATAATTACGGCAGTTGGCCCTTTTCAGTCAAATTGACTTGTTGGATCTTTATCA
TTCTAGTGATTGGGGCATTGGGTTATTTTGTCGTGATTAAGCCGAAGCTTGATGCGATTTCAAATGCACATGCACAAGAA
CAAAATTTACTGAATGAGTTTCGTGAAAAAGATTCAAAATTACGTAACTTGCAGCAATATCAAGCGCAATTGCAAGAAAT
GGAAGCTAATTTCAATCAGCAGTTAGAGCAGTTGCCGAAAGAAACTGAAATTCCTGGTTTGGTTGAAGATATCAACGTGA
GCGGCGTAAATTCTGGATTAAAGTTTAAAAATATTCGTTTAGAGCCAGAAATTCGCCAAGAGTTCTTTATCGAACAGCCG
ATTTCGATAGAAGCGACGGGTGATTATCATTCTTTTGGTTCATTTGTCAGTGGAATTGCAGCTTTGCCGCGTATTGTGAC
CTTGCATGACTTCGATATCTCAGCATCAAGTAATAATGAGAAAAAGACGGATATTCCGCAAATTTCATACAGTGTAAAGG
CTAAAACTTACCGCTATGTCGGGGCGACAGCTGCTGCAAGTGTGGAAAATACAGCTAAAGCAGATGCAGGAGGTGCTCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380U8X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.385

99.583

0.721
  comO Acinetobacter baylyi ADP1

67.755

100

0.692