Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6I51_RS13590 Genome accession   NZ_CP068187
Coordinates   2677798..2679024 (-) Length   408 a.a.
NCBI ID   WP_201702305.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FDAARGOS_1094     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2672798..2684024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I51_RS13565 (I6I51_13570) - 2674154..2674477 (+) 324 WP_125273379.1 pyrimidine/purine nucleoside phosphorylase -
  I6I51_RS13570 (I6I51_13575) rlmB 2674620..2675369 (+) 750 WP_004978746.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6I51_RS13575 (I6I51_13580) - 2675402..2676319 (+) 918 WP_201702301.1 DMT family transporter -
  I6I51_RS13580 (I6I51_13585) coaE 2676332..2676931 (-) 600 WP_201702303.1 dephospho-CoA kinase -
  I6I51_RS13585 (I6I51_13590) pilD 2676938..2677798 (-) 861 WP_176537049.1 A24 family peptidase Machinery gene
  I6I51_RS13590 (I6I51_13595) pilC 2677798..2679024 (-) 1227 WP_201702305.1 type II secretion system F family protein Machinery gene
  I6I51_RS13595 (I6I51_13600) pilB 2679055..2680773 (-) 1719 WP_201702307.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6I51_RS13600 (I6I51_13605) tpiA 2681053..2681844 (+) 792 WP_201702309.1 triose-phosphate isomerase -
  I6I51_RS13605 (I6I51_13610) secG 2681858..2682187 (+) 330 WP_004692710.1 preprotein translocase subunit SecG -
  I6I51_RS13635 (I6I51_13640) rimP 2683141..2683665 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44848.31 Da        Isoelectric Point: 9.8660

>NTDB_id=527915 I6I51_RS13590 WP_201702305.1 2677798..2679024(-) (pilC) [Acinetobacter johnsonii strain FDAARGOS_1094]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGTLDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=527915 I6I51_RS13590 WP_201702305.1 2677798..2679024(-) (pilC) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGCAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTCGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACTATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGAATAATGAAGAAAAAAGTGACGACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCACTGGTTCAAGGTTTTGAAATTGTGGCTGAAGGCCTAGAAAACCCATCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAAGGCGGTAATACCTTTGCAGGAGCACTCAAAAAATATCCGCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACTATGCTTGATCGTGTGGCAGTCTATAAA
GAGAAAAGTGAACTGCTCAAACAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTTGTGCCTGTTTTCCAAGATTTATTCAGCTCTTTTGGTGCAGACTTACCTGCATTCA
CTAAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGTTGGATAAAGCCGCGCTGAAAGCCCCAATTTTTGG
TGATTTAGTCTATAAAGCAATTATCGCGCGCTATAGCCGCACGCTGTCTACCACCTTTGCTGCGGGTGTGCCCTTAATTG
ATGCCCTAGAGTCTACAGCAGGCGCAACCAACAATGTTGTGTACGAAGAAGCTGTGATGAAGATTCGTGAAGATGTCGCA
ACAGGGCAACAGCTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCCGTACAGATGGTGGCGATTGGTGA
AGAATCTGGTACTCTCGATGCCATGCTGGATAAAGTTGCCACTCACTATGAAAATGAAGTCGATAATGCGGTAGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.48

100

0.885
  pilC Acinetobacter baylyi ADP1

81.618

100

0.816
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.417
  pilC Thermus thermophilus HB27

36.658

98.284

0.36