Detailed information NTG0527914

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6I51_RS13585
• Genome accession: NZ_CP068187
• Coordinates: 2676938..2677798 (-)
• Length: 286 a.a.
• NCBI ID: WP_176537049.1
• Uniprot ID: A0A7H8SEE5
• Organism: Acinetobacter johnsonii strain FDAARGOS_1094
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2671938..2682798

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I51_RS13560 (I6I51_13565)	recN	2672100..2673761 (-)	1662	WP_201702299.1	DNA repair protein RecN	-
I6I51_RS13565 (I6I51_13570)	-	2674154..2674477 (+)	324	WP_125273379.1	pyrimidine/purine nucleoside phosphorylase	-
I6I51_RS13570 (I6I51_13575)	rlmB	2674620..2675369 (+)	750	WP_004978746.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6I51_RS13575 (I6I51_13580)	-	2675402..2676319 (+)	918	WP_201702301.1	DMT family transporter	-
I6I51_RS13580 (I6I51_13585)	coaE	2676332..2676931 (-)	600	WP_201702303.1	dephospho-CoA kinase	-
I6I51_RS13585 (I6I51_13590)	pilD	2676938..2677798 (-)	861	WP_176537049.1	A24 family peptidase	Machinery gene
I6I51_RS13590 (I6I51_13595)	pilC	2677798..2679024 (-)	1227	WP_201702305.1	type II secretion system F family protein	Machinery gene
I6I51_RS13595 (I6I51_13600)	pilB	2679055..2680773 (-)	1719	WP_201702307.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6I51_RS13600 (I6I51_13605)	tpiA	2681053..2681844 (+)	792	WP_201702309.1	triose-phosphate isomerase	-
I6I51_RS13605 (I6I51_13610)	secG	2681858..2682187 (+)	330	WP_004692710.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31970.38 Da
• Isoelectric Point: 8.0620

>NTDB_id=527914 I6I51_RS13585 WP_176537049.1 2676938..2677798(-) (pilD) [Acinetobacter johnsonii strain FDAARGOS_1094]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA
IHWYQNIPVMSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLGGLGLGINSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=527914 I6I51_RS13585 WP_176537049.1 2676938..2677798(-) (pilD) [Acinetobacter johnsonii strain FDAARGOS_1094]
ATGCAAGAAATAATTTCCTATCTTATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTGAATGTGGTGATCTATCGCACTCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAGCAGCCAATTATTGATGAAACGAAGCTCACATTGAGTAAGCCTGCCTCAACCTGTCCCAAATGTAAAAGTGCC
ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTCCTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCTTTGGTCGTGGTTGCAGTATTTGGGCCAACAATCCAAA
TGCTGTTCGGTCTCGTGCTCACTTATATTTTAATCGCCTTAACATTTATTGATTTTGACACTCAGCTTTTACCTGATCGT
TATACCCTCACCCTTGGAGGTCTAGGTTTAGGTATCAATAGTTATGCGATTTACACCACACCAACAGCGGCCATTTGGGG
TTACATCATTGGCTTTTTATGCTTATGGATCGTGTACTATCTGTTTAAGCTCATCACTGGCAAGGAAGGCATGGGCTATG
GTGACTTTAAGCTACTTGCAGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC
GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGTAAAGAAAATCAACCTTTTGCTTTTGGCCCATATATTGCCAT
CGCAGGATGGATTGCCTTTTTATGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

3D structure

• AlphaFold DB: A0A7H8SEE5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	79.298	99.65	0.79
pilD	Acinetobacter nosocomialis M2	79.298	99.65	0.79
pilD	Vibrio cholerae strain A1552	54.478	93.706	0.51
pilD	Vibrio campbellii strain DS40M4	51.301	94.056	0.483
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437