Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JJN09_RS21820 Genome accession   NZ_CP067412
Coordinates   4826195..4827412 (+) Length   405 a.a.
NCBI ID   WP_249483722.1    Uniprot ID   -
Organism   Pseudomonas sp. HS6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4821195..4832412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN09_RS21800 (JJN09_21770) - 4822705..4823001 (+) 297 WP_249483719.1 DUF2845 domain-containing protein -
  JJN09_RS21805 (JJN09_21775) - 4823167..4823523 (-) 357 WP_096820895.1 BON domain-containing protein -
  JJN09_RS21810 (JJN09_21780) - 4823822..4824265 (-) 444 WP_249483720.1 pilin -
  JJN09_RS21815 (JJN09_21785) pilB 4824492..4826192 (+) 1701 WP_249483721.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JJN09_RS21820 (JJN09_21790) pilC 4826195..4827412 (+) 1218 WP_249483722.1 type II secretion system F family protein Machinery gene
  JJN09_RS21825 (JJN09_21795) pilD 4827414..4828286 (+) 873 WP_249483723.1 A24 family peptidase Machinery gene
  JJN09_RS21830 (JJN09_21800) coaE 4828283..4828906 (+) 624 WP_249483724.1 dephospho-CoA kinase -
  JJN09_RS21835 (JJN09_21805) yacG 4828903..4829103 (+) 201 WP_096820889.1 DNA gyrase inhibitor YacG -
  JJN09_RS21840 (JJN09_21810) - 4829112..4829327 (-) 216 WP_007959584.1 hypothetical protein -
  JJN09_RS21845 (JJN09_21815) - 4829393..4830082 (-) 690 WP_249483725.1 energy-coupling factor ABC transporter permease -
  JJN09_RS21850 (JJN09_21820) - 4830216..4830842 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  JJN09_RS21855 (JJN09_21825) - 4830839..4831366 (+) 528 WP_249483726.1 MOSC domain-containing protein -
  JJN09_RS21860 (JJN09_21830) - 4831418..4831591 (+) 174 WP_096820886.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44178.01 Da        Isoelectric Point: 10.1093

>NTDB_id=525943 JJN09_RS21820 WP_249483722.1 4826195..4827412(+) (pilC) [Pseudomonas sp. HS6]
MAVKAAKISVYAWEGTDKKGSRITGELSGQNPALIKAQLRKQGINPGKVRKKSASWLNFGKRIKPLDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPTAVILVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVIGLSEFMQQWWWAILGVLVAAFFGTR
HALKKSQALRDRRDAWLLKLPLVGTMMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVATGM
QLNFSMRTTGIFPNMAIQMTAIGEESGALDDMLDKVAGFYEEEVDNMVDNLTSLMEPFVMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=525943 JJN09_RS21820 WP_249483722.1 4826195..4827412(+) (pilC) [Pseudomonas sp. HS6]
ATGGCGGTCAAGGCAGCGAAAATCAGTGTCTATGCCTGGGAAGGCACCGACAAGAAAGGCAGCAGGATCACCGGCGAACT
GAGCGGGCAGAACCCCGCACTGATCAAGGCCCAGTTGCGCAAGCAGGGCATCAACCCCGGCAAGGTGCGCAAGAAATCCG
CGTCGTGGCTGAATTTCGGCAAACGCATCAAGCCGCTGGACATCGCCCTCTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGTTGCTGCAGTCGTTCGACATCATCGGCGAAGGCTTTGAAAACCCGGCGATGCGCAAACTGGTGGACGA
GGTAAAACAGGAAGTCGCCGCCGGCAACAGCTTCGCCGCAGCCCTGCGCAAGAAGCCGCAATACTTCGACGAGCTGTACT
GCAACCTGGTCGATGCCGGCGAACAAGCCGGCGCCCTCGACACCCTGCTCGAACGCGTGGCGACCTATAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGACCGCCGTGATCCTGGTGGCGGCGGTCGTCACCGGGAT
TCTGCTGGTGAAAGTAGTACCGCAGTTTCAGTCGGTGTTTTCCGGGTTCGGTGCCGAACTGCCGGCGTTCACCCTGATGG
TGATTGGTCTCTCGGAGTTCATGCAGCAATGGTGGTGGGCGATTCTCGGCGTGCTGGTTGCGGCGTTTTTCGGCACTCGA
CATGCCCTGAAAAAATCCCAGGCCCTGCGTGACCGGCGTGATGCCTGGCTGCTGAAACTGCCACTGGTGGGCACCATGAT
GTACAAGTCCGCCGTGGCCCGTTTCGCCCGAACCCTGTCGACCACGTTTGCCGCCGGCGTGCCGCTGGTCGAAGCGCTGG
ACTCGGTCGCTGGAGCCACCGGCAACGTGGTGTTCAAACGTGCGGTGCTGCGCATTCGTCAGGACGTTGCCACCGGCATG
CAACTGAATTTCTCGATGCGCACCACCGGAATCTTTCCGAACATGGCGATACAGATGACCGCCATCGGCGAAGAGTCCGG
CGCCCTGGACGACATGCTCGACAAGGTTGCCGGGTTCTACGAGGAAGAAGTGGATAACATGGTCGATAACCTCACCAGCC
TGATGGAGCCTTTCGTCATGGTGGTGCTTGGGGTGATCGTCGGCGGACTGGTCGTGGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.333

100

0.733
  pilC Acinetobacter baumannii D1279779

59.069

100

0.595
  pilC Acinetobacter baylyi ADP1

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

53.5

98.765

0.528
  pilG Neisseria gonorrhoeae MS11

42.928

99.506

0.427
  pilG Neisseria meningitidis 44/76-A

42.432

99.506

0.422
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

40.64

100

0.407
  pilC Thermus thermophilus HB27

38.308

99.259

0.38