Detailed information NTG0525944

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JJN09_RS21825
• Genome accession: NZ_CP067412
• Coordinates: 4827414..4828286 (+)
• Length: 290 a.a.
• NCBI ID: WP_249483723.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HS6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4822414..4833286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JJN09_RS21800 (JJN09_21770)	-	4822705..4823001 (+)	297	WP_249483719.1	DUF2845 domain-containing protein	-
JJN09_RS21805 (JJN09_21775)	-	4823167..4823523 (-)	357	WP_096820895.1	BON domain-containing protein	-
JJN09_RS21810 (JJN09_21780)	-	4823822..4824265 (-)	444	WP_249483720.1	pilin	-
JJN09_RS21815 (JJN09_21785)	pilB	4824492..4826192 (+)	1701	WP_249483721.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JJN09_RS21820 (JJN09_21790)	pilC	4826195..4827412 (+)	1218	WP_249483722.1	type II secretion system F family protein	Machinery gene
JJN09_RS21825 (JJN09_21795)	pilD	4827414..4828286 (+)	873	WP_249483723.1	A24 family peptidase	Machinery gene
JJN09_RS21830 (JJN09_21800)	coaE	4828283..4828906 (+)	624	WP_249483724.1	dephospho-CoA kinase	-
JJN09_RS21835 (JJN09_21805)	yacG	4828903..4829103 (+)	201	WP_096820889.1	DNA gyrase inhibitor YacG	-
JJN09_RS21840 (JJN09_21810)	-	4829112..4829327 (-)	216	WP_007959584.1	hypothetical protein	-
JJN09_RS21845 (JJN09_21815)	-	4829393..4830082 (-)	690	WP_249483725.1	energy-coupling factor ABC transporter permease	-
JJN09_RS21850 (JJN09_21820)	-	4830216..4830842 (+)	627	WP_007959580.1	DUF1780 domain-containing protein	-
JJN09_RS21855 (JJN09_21825)	-	4830839..4831366 (+)	528	WP_249483726.1	MOSC domain-containing protein	-
JJN09_RS21860 (JJN09_21830)	-	4831418..4831591 (+)	174	WP_096820886.1	DUF3094 domain-containing protein	-
JJN09_RS21865 (JJN09_21835)	-	4831658..4832956 (+)	1299	WP_064599500.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32334.73 Da
• Isoelectric Point: 7.9937

>NTDB_id=525944 JJN09_RS21825 WP_249483723.1 4827414..4828286(+) (pilD) [Pseudomonas sp. HS6]
MPIDELFAFYPLAFVFTALLLGLVVGSFLNVVIWRLPKMLEREWRQQAHDVLGLPVETPPPVYNLMLPHSQCPHCAHRIR
AWENIPLLSYLLLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHLGFGWPACLMIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDRKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=525944 JJN09_RS21825 WP_249483723.1 4827414..4828286(+) (pilD) [Pseudomonas sp. HS6]
ATGCCCATCGACGAACTCTTCGCTTTCTATCCGCTGGCCTTTGTCTTCACCGCCCTGTTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTGGTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGAATGGCGCCAGCAGGCCCACGACGTGCTCGGGT
TGCCGGTAGAAACGCCTCCGCCTGTCTACAACCTGATGCTGCCGCACTCGCAGTGCCCGCATTGCGCCCACCGCATTCGT
GCGTGGGAAAACATTCCGCTGCTCAGTTACCTGCTTTTGCGCGGCCGCTGCTCGTCATGCGCGGCGCCGATCAGCAAGCG
TTATCCCTTGACCGAACTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGTTTTGGCTGGCCGGCGTGCC
TGATGATCGTCCTGACCTGGGGCTTGCTGGCGATGAGTCTGATCGACACCGAGCATCAGTTGCTGCCTGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGCCTGTTCGTCTCGCTGCACGACGCCCTGTGGGGAGCGGT
GGCTGGCTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGTCACGGTGACT
TCAAGTTGCTGGCGCTGCTCGGGGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACCATCCTCCTGTCTTCGCTGGTGGGG
GCGGTGCTGGGGGTGATTCTGCTCAAGCTGCGCGACCGAAAAACCTCGACGCCAATCCCCTTCGGGCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.319	97.241	0.538
pilD	Vibrio campbellii strain DS40M4	52.128	97.241	0.507
pilD	Acinetobacter baumannii D1279779	48.54	94.483	0.459
pilD	Acinetobacter nosocomialis M2	48.54	94.483	0.459
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452