Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JHT90_RS04075 Genome accession   NZ_CP067393
Coordinates   898887..900095 (-) Length   402 a.a.
NCBI ID   WP_201094475.1    Uniprot ID   A0A974NH06
Organism   Entomomonas asaccharolytica strain F2A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893887..905095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHT90_RS04050 (JHT90_04050) rpsO 894503..894772 (+) 270 WP_201094453.1 30S ribosomal protein S15 -
  JHT90_RS04055 (JHT90_04055) pnp 894916..897051 (+) 2136 WP_201094455.1 polyribonucleotide nucleotidyltransferase -
  JHT90_RS04060 (JHT90_04060) yacG 897102..897320 (-) 219 WP_201094467.1 DNA gyrase inhibitor YacG -
  JHT90_RS04065 (JHT90_04065) coaE 897325..897927 (-) 603 WP_201094471.1 dephospho-CoA kinase -
  JHT90_RS04070 (JHT90_04070) pilD 898015..898890 (-) 876 WP_379971860.1 prepilin peptidase Machinery gene
  JHT90_RS04075 (JHT90_04075) pilC 898887..900095 (-) 1209 WP_201094475.1 type II secretion system F family protein Machinery gene
  JHT90_RS04080 (JHT90_04080) pilB 900279..901943 (-) 1665 WP_201094476.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JHT90_RS04085 (JHT90_04085) - 902109..903089 (-) 981 WP_201094479.1 HD domain-containing phosphohydrolase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43875.85 Da        Isoelectric Point: 10.0675

>NTDB_id=525818 JHT90_RS04075 WP_201094475.1 898887..900095(-) (pilC) [Entomomonas asaccharolytica strain F2A]
MAQVAKTRTYLWKGVDKSGNKLKGELNATDPTVIKAILRKQGITAKQINRKLELNIGGKIKPIDIAIFTRQMATMMKAGV
PMIQALEIIAEGAEKPKIRDLLDNIKQEVASGNSFTSSLRKRPLYFDELFCSLIEAGEKSGTLETLLDRVASYKEKSESL
KKKVKKAMIYPAAILIVAVVVSAILLVKVVPQFAAIFQSFGADLPWLTQQVVDLSEYLQSDGWKVLIAIFVIGFVIKEGY
KRSPAFRDLIDRGLLRIPIVGSIIYNSAVARFTRTLSTTFAAGVPLVEALDSVAGATGNIVYKKAVLKIKQEVSTGRQLN
FAMRGSNVFPPLAIQLTAIGEESGSLDSMLGKAANFYEEAVDNIVDSLSALMEPMIMAVLGVIIGTLIIAMYLPIFQMGQ
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=525818 JHT90_RS04075 WP_201094475.1 898887..900095(-) (pilC) [Entomomonas asaccharolytica strain F2A]
ATGGCGCAAGTAGCAAAAACACGTACTTATTTATGGAAAGGTGTAGATAAATCTGGTAACAAACTTAAAGGGGAATTAAA
TGCAACAGACCCTACCGTTATCAAAGCCATTCTCCGTAAACAGGGTATTACTGCTAAACAGATTAATCGAAAATTAGAGC
TTAATATAGGCGGTAAAATCAAGCCTATTGATATTGCTATTTTTACTCGCCAAATGGCCACCATGATGAAAGCTGGTGTT
CCTATGATACAAGCACTTGAGATTATTGCTGAGGGCGCTGAAAAACCTAAAATACGTGACCTACTAGATAATATTAAACA
AGAGGTAGCATCAGGTAATAGTTTTACTTCATCTTTAAGAAAACGTCCTTTATATTTTGATGAGCTTTTTTGTAGTCTTA
TTGAAGCAGGTGAAAAATCTGGTACATTAGAAACCTTATTAGATCGAGTTGCTAGCTATAAAGAAAAAAGTGAATCATTA
AAGAAAAAAGTTAAAAAAGCTATGATATATCCAGCAGCTATTCTAATTGTAGCTGTTGTTGTATCTGCCATCCTGTTAGT
CAAAGTAGTGCCTCAGTTTGCTGCTATTTTCCAAAGTTTTGGAGCTGATTTACCTTGGTTAACTCAACAAGTTGTTGACT
TATCAGAATACTTACAGTCTGATGGTTGGAAAGTACTTATCGCAATATTCGTTATTGGTTTCGTAATCAAAGAAGGCTAT
AAACGCTCTCCTGCTTTCCGTGACCTTATTGATAGAGGTCTATTACGTATCCCTATAGTGGGATCTATTATCTATAATTC
TGCTGTTGCCCGTTTCACTCGTACATTATCTACTACTTTTGCTGCTGGTGTACCTCTTGTAGAAGCCTTAGATTCAGTAG
CAGGCGCTACAGGTAATATTGTCTATAAAAAAGCAGTACTTAAAATTAAACAAGAAGTTTCTACTGGTAGACAACTTAAT
TTTGCTATGCGTGGTAGTAATGTATTCCCTCCATTAGCTATACAGTTAACTGCCATTGGTGAAGAGTCAGGTTCATTAGA
TAGTATGCTTGGTAAAGCAGCCAATTTTTATGAGGAAGCTGTAGATAATATTGTTGATAGTTTATCTGCACTGATGGAAC
CAATGATTATGGCTGTGTTAGGGGTTATTATTGGTACATTAATTATTGCTATGTACTTACCAATTTTCCAAATGGGTCAA
GTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.33

100

0.619
  pilC Acinetobacter baylyi ADP1

59.75

99.502

0.595
  pilC Acinetobacter baumannii D1279779

57.035

99.005

0.565
  pilC Legionella pneumophila strain ERS1305867

48.615

98.756

0.48
  pilG Neisseria gonorrhoeae MS11

44.14

99.751

0.44
  pilG Neisseria meningitidis 44/76-A

43.89

99.751

0.438
  pilC Vibrio campbellii strain DS40M4

40.5

99.502

0.403
  pilC Vibrio cholerae strain A1552

38.213

100

0.383
  pilC Thermus thermophilus HB27

37.5

99.502

0.373