NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	JHT90_RS04070	Genome accession	NZ_CP067393
Coordinates	898015..898890 (-)	Length	291 a.a.
NCBI ID	WP_379971860.1	Uniprot ID	-
Organism	Entomomonas asaccharolytica strain F2A
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 893015..903890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHT90_RS04040 (JHT90_04040)	rbfA	893046..893435 (+)	390	WP_201094447.1	30S ribosome-binding factor RbfA	-
JHT90_RS04045 (JHT90_04045)	truB	893432..894349 (+)	918	WP_201094449.1	tRNA pseudouridine(55) synthase TruB	-
JHT90_RS04050 (JHT90_04050)	rpsO	894503..894772 (+)	270	WP_201094453.1	30S ribosomal protein S15	-
JHT90_RS04055 (JHT90_04055)	pnp	894916..897051 (+)	2136	WP_201094455.1	polyribonucleotide nucleotidyltransferase	-
JHT90_RS04060 (JHT90_04060)	yacG	897102..897320 (-)	219	WP_201094467.1	DNA gyrase inhibitor YacG	-
JHT90_RS04065 (JHT90_04065)	coaE	897325..897927 (-)	603	WP_201094471.1	dephospho-CoA kinase	-
JHT90_RS04070 (JHT90_04070)	pilD	898015..898890 (-)	876	WP_379971860.1	prepilin peptidase	Machinery gene
JHT90_RS04075 (JHT90_04075)	pilC	898887..900095 (-)	1209	WP_201094475.1	type II secretion system F family protein	Machinery gene
JHT90_RS04080 (JHT90_04080)	pilB	900279..901943 (-)	1665	WP_201094476.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JHT90_RS04085 (JHT90_04085)	-	902109..903089 (-)	981	WP_201094479.1	HD domain-containing phosphohydrolase	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32079.53 Da Isoelectric Point: 8.2170

                                >NTDB_id=525817 JHT90_RS04070 WP_379971860.1 898015..898890(-) (pilD) [Entomomonas asaccharolytica strain F2A]

MILMTVFTEFPLLFIFASLLIGLLVGSFLNVVIYRLPKMMINAWQQEAREILQLPQPTEPHTKFNLFLPCSTCPYCGHKI

TAIENIPIISYLILRGRCRGCKASISKRYPLIELCSGILSGWIAWYFGFSVEALLLIFLTWGLIAMSMIDIDHQLLPDSL

VLPLLWIGILANTYGVFPDISINSAILGAVIGYMSLWSVNALFKLLRGYDGMGHGDFKLLALFGAWGGYQILPVVILLSA

AAGAVIGIIGVLLFAGKNKMPYGPYLAIAGWIALIWGQDIVAAYLKFSGLN

Nucleotide

Download Length: 876 bp

                                >NTDB_id=525817 JHT90_RS04070 WP_379971860.1 898015..898890(-) (pilD) [Entomomonas asaccharolytica strain F2A]

ATAATATTAATGACTGTTTTTACCGAATTTCCTTTATTATTTATTTTTGCCTCCCTACTAATAGGTTTATTAGTAGGGAG

TTTTCTTAATGTGGTTATTTATCGTCTGCCTAAGATGATGATCAATGCTTGGCAACAGGAAGCCCGTGAAATTCTTCAGC

TACCTCAACCTACTGAGCCACACACCAAGTTTAATCTTTTTTTGCCCTGCTCCACTTGCCCTTATTGTGGTCATAAAATA

ACTGCTATAGAAAATATACCTATCATCAGTTACCTAATATTAAGAGGTCGTTGTAGAGGTTGTAAAGCATCTATTAGCAA

ACGCTATCCGCTTATTGAATTATGTTCAGGTATTCTGTCTGGTTGGATTGCTTGGTATTTTGGTTTCTCTGTGGAAGCCT

TATTACTAATCTTTTTAACATGGGGGCTAATAGCAATGAGCATGATCGATATCGATCATCAACTATTACCTGATTCGTTA

GTATTACCCTTATTATGGATAGGTATTCTTGCTAACACCTATGGTGTATTTCCTGATATCAGTATAAACAGTGCTATTTT

AGGTGCTGTCATTGGCTATATGTCCCTATGGTCTGTAAATGCCCTCTTTAAGCTACTACGTGGCTATGATGGCATGGGTC

ATGGTGACTTTAAACTACTTGCGCTCTTTGGTGCTTGGGGTGGCTATCAAATTTTACCTGTAGTTATACTACTATCCGCT

GCAGCTGGTGCAGTAATAGGTATCATTGGTGTATTATTATTCGCAGGTAAGAATAAGATGCCCTATGGCCCCTATTTAGC

TATAGCAGGTTGGATTGCCTTAATTTGGGGGCAGGATATTGTGGCTGCCTATTTAAAATTTTCAGGTCTTAATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-127)

Type IV leader peptidase family (Peptidase_A24)

(138-248)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	50.526	97.938	0.495
pilD	Vibrio campbellii strain DS40M4	49.474	97.938	0.485
pilD	Acinetobacter baumannii D1279779	48.327	92.44	0.447
pilD	Acinetobacter nosocomialis M2	48.327	92.44	0.447
pilD	Neisseria gonorrhoeae MS11	50.198	86.942	0.436

Detailed information NTG0525817