Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JIO05_RS05705 Genome accession   NZ_CP067392
Coordinates   1162755..1163180 (-) Length   141 a.a.
NCBI ID   WP_128211868.1    Uniprot ID   -
Organism   Pediococcus acidilactici strain pll     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1157755..1168180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIO05_RS05650 (JIO05_05650) - 1157898..1158263 (-) 366 WP_159215553.1 hypothetical protein -
  JIO05_RS05655 (JIO05_05655) - 1158280..1158480 (-) 201 WP_128211852.1 hypothetical protein -
  JIO05_RS05660 (JIO05_05660) - 1158480..1158620 (-) 141 WP_159215552.1 hypothetical protein -
  JIO05_RS05665 (JIO05_05665) - 1158623..1158994 (-) 372 WP_128211854.1 N-acetylmuramoyl-L-alanine amidase -
  JIO05_RS05670 (JIO05_05670) - 1158981..1159130 (-) 150 WP_164873659.1 hypothetical protein -
  JIO05_RS05675 (JIO05_05675) - 1159127..1159528 (-) 402 WP_128211856.1 RusA family crossover junction endodeoxyribonuclease -
  JIO05_RS05680 (JIO05_05680) - 1159509..1160141 (-) 633 WP_128211858.1 RNA polymerase subunit sigma-70 -
  JIO05_RS05685 (JIO05_05685) - 1160259..1160903 (-) 645 WP_229092964.1 ATP-binding protein -
  JIO05_RS05690 (JIO05_05690) - 1161055..1161807 (-) 753 WP_128211862.1 conserved phage C-terminal domain-containing protein -
  JIO05_RS05695 (JIO05_05695) - 1161846..1162076 (-) 231 WP_201197730.1 hypothetical protein -
  JIO05_RS05700 (JIO05_05700) - 1162060..1162743 (-) 684 WP_128211866.1 putative HNHc nuclease -
  JIO05_RS05705 (JIO05_05705) ssb 1162755..1163180 (-) 426 WP_128211868.1 single-stranded DNA-binding protein Machinery gene
  JIO05_RS05710 (JIO05_05710) - 1163173..1163871 (-) 699 WP_201197731.1 ERF family protein -
  JIO05_RS05715 (JIO05_05715) - 1163872..1164327 (-) 456 WP_128211872.1 chromosome segregation protein SMC -
  JIO05_RS05720 (JIO05_05720) - 1164551..1165213 (+) 663 WP_201197732.1 hypothetical protein -
  JIO05_RS05725 (JIO05_05725) - 1165323..1165577 (-) 255 WP_128211987.1 hypothetical protein -
  JIO05_RS05730 (JIO05_05730) - 1165678..1166007 (-) 330 WP_128211985.1 DUF771 domain-containing protein -
  JIO05_RS05735 (JIO05_05735) - 1166304..1167086 (-) 783 WP_128211989.1 phage antirepressor -
  JIO05_RS05740 (JIO05_05740) - 1167192..1167386 (+) 195 WP_128211983.1 hypothetical protein -
  JIO05_RS05745 (JIO05_05745) - 1167378..1167515 (-) 138 WP_159215550.1 hypothetical protein -
  JIO05_RS05750 (JIO05_05750) - 1167529..1167747 (-) 219 WP_235016628.1 helix-turn-helix transcriptional regulator -
  JIO05_RS05755 (JIO05_05755) - 1167806..1168114 (+) 309 WP_128211981.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15657.41 Da        Isoelectric Point: 7.9971

>NTDB_id=525796 JIO05_RS05705 WP_128211868.1 1162755..1163180(-) (ssb) [Pediococcus acidilactici strain pll]
MINRTVLIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREADFINCVMWRKAAENFAKYTQKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVADNFSLLDSKPKGNQQNNARQASTPGDLFANGGQSIDISDDQLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=525796 JIO05_RS05705 WP_128211868.1 1162755..1163180(-) (ssb) [Pediococcus acidilactici strain pll]
ATGATTAATCGAACAGTCCTAATAGGACGCCTAACTAAAGATGTTGAACTTCGCCACACAGCTAAAGGTGATGCGGTAGC
TAGTTTTACCGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGCGAAGCGGATTTCATCAACTGTGTAATGT
GGCGTAAGGCAGCAGAAAACTTTGCCAAGTACACACAAAAAGGTTCGTTGGTAGGCATTGACGGTCGAATTCAAACCCGT
TCGTACGAAAACCAACAAGGACAACGAGTTTATGTAACTGAGGTTGTAGCTGATAACTTCTCGTTGCTAGATTCGAAACC
AAAAGGCAACCAGCAAAATAATGCACGGCAAGCATCAACGCCGGGAGATCTGTTCGCCAATGGTGGTCAATCAATCGACA
TTTCAGATGATCAGCTCCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.709
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.66
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.037

76.596

0.475
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.662

100

0.44
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.958

100

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

42.958

100

0.433
  ssbB/cilA Streptococcus pneumoniae Rx1

42.254

100

0.426
  ssbB/cilA Streptococcus pneumoniae D39

42.254

100

0.426
  ssbB/cilA Streptococcus pneumoniae R6

42.254

100

0.426
  ssbB/cilA Streptococcus mitis SK321

42.254

100

0.426
  ssbA Streptococcus mutans UA159

39.007

100

0.39