Detailed information NTG0525103

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: JGR64_RS10985
• Genome accession: NZ_CP067112
• Coordinates: 2392248..2393402 (+)
• Length: 384 a.a.
• NCBI ID: WP_233348192.1
• Uniprot ID: -
• Organism: Luteimonas sp. MC1572
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2387248..2398402

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGR64_RS10970 (JGR64_10970)	pilA2	2387659..2388093 (+)	435	WP_199373413.1	pilin	Machinery gene
JGR64_RS10975 (JGR64_10975)	-	2388198..2390111 (+)	1914	WP_199373414.1	hypothetical protein	-
JGR64_RS10980 (JGR64_10980)	pilB	2390230..2391954 (+)	1725	WP_199373415.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JGR64_RS10985 (JGR64_10985)	pilC	2392248..2393402 (+)	1155	WP_233348192.1	type II secretion system F family protein	Machinery gene
JGR64_RS10990 (JGR64_10990)	-	2393407..2394267 (+)	861	WP_199373417.1	A24 family peptidase	-
JGR64_RS10995 (JGR64_10995)	coaE	2394312..2394935 (+)	624	WP_199373418.1	dephospho-CoA kinase	-
JGR64_RS11000 (JGR64_11000)	-	2394940..2395398 (-)	459	WP_199373419.1	hypothetical protein	-
JGR64_RS11005 (JGR64_11005)	-	2395395..2396945 (-)	1551	WP_200649742.1	DUF2235 domain-containing protein	-
JGR64_RS11010 (JGR64_11010)	-	2396952..2397575 (-)	624	WP_199373421.1	hypothetical protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 41950.46 Da
• Isoelectric Point: 9.3407

>NTDB_id=525103 JGR64_RS10985 WP_233348192.1 2392248..2393402(+) (pilC) [Luteimonas sp. MC1572]
MKGEQSAKNANLLRAELRRQGITPTVVKPKAKPLFGSAGQKITAKEIAVFSRQLATMIKSGVPVVQALEIIGNGHKNERM
KVMVNTVRLDIEGGSSIYESMSKHPVQFDELYRNLVKAGETAGVLETVLDTIATYKENTESLKGKIKKALFYPATVIAVA
ILVSAVLLVFVVPQFQATFKSFGADLPAFTQLIINASDFMIAWWWLILAIIVGGGCFFMYSYRRSPPLQHLMDRLVLKIP
VIGQILHNAAVARFARTLATTFRAGVPLVEALDIVAGATGNQVYEKAVHEIKDDVSVGYQLNMAMKQVNIFPHMVVQMTA
IGEEAGALDTMLFKVAEFFEEEVNNSVDALSSLLEPMIMVIIGGVVGSMVIGMYLPIFKIAGTI

Nucleotide

• Length: 1155 bp

>NTDB_id=525103 JGR64_RS10985 WP_233348192.1 2392248..2393402(+) (pilC) [Luteimonas sp. MC1572]
ATGAAGGGCGAGCAGTCGGCGAAGAACGCCAACCTGCTGCGCGCCGAACTGCGACGCCAGGGCATCACCCCCACTGTAGT
AAAGCCAAAGGCCAAACCACTGTTTGGCAGCGCGGGCCAGAAGATTACCGCCAAGGAAATCGCGGTGTTCAGCCGGCAGC
TAGCCACCATGATCAAGTCCGGCGTGCCGGTGGTGCAGGCGCTGGAGATCATTGGCAACGGCCACAAGAATGAGCGCATG
AAGGTGATGGTTAACACCGTGCGCCTCGACATCGAGGGCGGTTCCTCGATCTACGAATCGATGAGCAAGCACCCGGTGCA
ATTTGACGAGCTGTACCGCAACCTGGTGAAGGCGGGTGAAACGGCCGGCGTGCTTGAGACTGTGCTCGACACCATCGCTA
CCTACAAGGAAAACACCGAGAGCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTATCCGGCCACGGTGATCGCGGTGGCG
ATCCTGGTCAGCGCGGTCTTGCTGGTGTTCGTGGTGCCGCAGTTCCAGGCGACCTTCAAGAGCTTCGGCGCCGACCTGCC
GGCGTTTACCCAGCTGATCATCAACGCAAGCGACTTCATGATCGCGTGGTGGTGGCTGATATTGGCGATCATTGTCGGCG
GCGGCTGCTTTTTCATGTACTCCTACAGGCGCTCGCCCCCGTTGCAGCATCTGATGGACAGGCTGGTACTGAAGATTCCG
GTCATCGGCCAGATTCTCCACAACGCCGCCGTCGCCCGCTTCGCCCGCACCTTGGCCACCACTTTCAGGGCCGGCGTTCC
GCTGGTCGAAGCACTGGACATCGTGGCCGGCGCCACCGGCAACCAGGTATACGAGAAGGCCGTGCACGAGATCAAGGACG
ACGTGTCCGTGGGCTACCAGCTCAACATGGCCATGAAGCAGGTCAACATTTTCCCGCACATGGTGGTGCAGATGACCGCC
ATCGGCGAAGAGGCCGGCGCGCTGGACACCATGCTGTTCAAGGTGGCCGAGTTCTTCGAGGAAGAGGTCAACAACTCGGT
CGATGCGCTGAGCAGCCTGCTGGAGCCGATGATCATGGTCATCATCGGCGGCGTGGTGGGCTCGATGGTGATCGGCATGT
ACCTGCCGATCTTCAAGATCGCGGGCACCATCTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (254-376)

• Type II secretion system (T2SS), protein F (T2SSF) (50-173)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.906	100	0.539
pilC	Pseudomonas stutzeri DSM 10701	53.385	100	0.534
pilC	Acinetobacter baylyi ADP1	49.61	100	0.497
pilC	Acinetobacter baumannii D1279779	49.351	100	0.495
pilG	Neisseria gonorrhoeae MS11	44.56	100	0.448
pilG	Neisseria meningitidis 44/76-A	44.301	100	0.445
pilC	Thermus thermophilus HB27	43.567	89.063	0.388
pilC	Vibrio campbellii strain DS40M4	39.785	96.875	0.385
pilC	Vibrio cholerae strain A1552	40	96.354	0.385