Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   JFY49_RS14365 Genome accession   NZ_CP067019
Coordinates   2913840..2914286 (-) Length   148 a.a.
NCBI ID   WP_200223276.1    Uniprot ID   A0A7T7R688
Organism   Acinetobacter sp. CS-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2908840..2919286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFY49_RS14340 (JFY49_14340) - 2909273..2910907 (-) 1635 WP_200223271.1 PglL family O-oligosaccharyltransferase -
  JFY49_RS14345 (JFY49_14345) - 2911083..2911301 (-) 219 WP_227609476.1 hypothetical protein -
  JFY49_RS14355 (JFY49_14355) - 2912236..2913546 (-) 1311 WP_200223274.1 O-antigen ligase family protein -
  JFY49_RS14360 (JFY49_14360) - 2913545..2913727 (+) 183 WP_200223275.1 hypothetical protein -
  JFY49_RS14365 (JFY49_14365) comP 2913840..2914286 (-) 447 WP_200223276.1 pilin Machinery gene
  JFY49_RS14375 (JFY49_14375) - 2915674..2916234 (-) 561 WP_200223277.1 TPM domain-containing protein -
  JFY49_RS14380 (JFY49_14380) - 2916228..2917280 (-) 1053 WP_200223278.1 TPM domain-containing protein -
  JFY49_RS14385 (JFY49_14385) - 2917311..2917901 (-) 591 WP_200223279.1 LemA family protein -
  JFY49_RS14390 (JFY49_14390) - 2918068..2918952 (-) 885 WP_200223280.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15373.63 Da        Isoelectric Point: 7.7746

>NTDB_id=524483 JFY49_RS14365 WP_200223276.1 2913840..2914286(-) (comP) [Acinetobacter sp. CS-2]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIVRSKVTEGLNLASSYKTVIAENAAAGASSLILGVPTTASTENVTSI
TPNETTGAIVIQYTPKAKSVKLTLTPKDGSEGGSNLTAGTVPANQITWVCTVDDATNKNKYVPANCRS

Nucleotide


Download         Length: 447 bp        

>NTDB_id=524483 JFY49_RS14365 WP_200223276.1 2913840..2914286(-) (comP) [Acinetobacter sp. CS-2]
ATGAATGCACAAAAGGGTTTTACTCTTATTGAATTAATGATCGTAGTCGCGATTATCGGTATTTTGGCTGCAATTGCGAT
TCCAGCTTATCAAGATTATATCGTTCGTTCTAAAGTGACTGAAGGTTTAAACCTTGCGTCGTCTTATAAAACAGTCATTG
CTGAAAATGCTGCTGCAGGTGCTTCTAGTTTAATATTGGGTGTCCCAACCACTGCTTCAACTGAGAATGTAACATCTATT
ACACCTAACGAAACTACTGGCGCAATTGTAATTCAATACACTCCTAAAGCAAAAAGTGTTAAGTTAACACTAACTCCAAA
AGATGGGTCTGAAGGAGGTTCTAATCTTACAGCGGGTACAGTTCCAGCTAATCAAATCACTTGGGTTTGCACAGTAGATG
ATGCTACAAACAAAAATAAATATGTTCCAGCAAATTGCCGTTCATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

47.853

100

0.527
  pilA2 Legionella pneumophila str. Paris

47.973

100

0.48
  pilA2 Legionella pneumophila strain ERS1305867

47.973

100

0.48
  pilA Ralstonia pseudosolanacearum GMI1000

44.375

100

0.48
  pilA/pilA1 Eikenella corrodens VA1

38.65

100

0.426
  pilA Pseudomonas aeruginosa PAK

37.821

100

0.399
  pilA Acinetobacter baumannii strain A118

40.411

98.649

0.399
  pilE Neisseria gonorrhoeae strain FA1090

32.584

100

0.392
  pilA Vibrio campbellii strain DS40M4

37.5

100

0.385
  pilA Vibrio parahaemolyticus RIMD 2210633

44.262

82.432

0.365