Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6I26_RS06280 Genome accession   NZ_CP067014
Coordinates   1268673..1268984 (+) Length   103 a.a.
NCBI ID   WP_029055749.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1069     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263673..1273984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I26_RS06250 (I6I26_06250) - 1264630..1264833 (+) 204 WP_017636256.1 YqgQ family protein -
  I6I26_RS06255 (I6I26_06255) - 1264830..1265816 (+) 987 WP_017636255.1 ROK family glucokinase -
  I6I26_RS06260 (I6I26_06260) - 1265816..1266139 (+) 324 WP_017636254.1 MTH1187 family thiamine-binding protein -
  I6I26_RS06265 (I6I26_06265) - 1266143..1266766 (+) 624 WP_017636253.1 MBL fold metallo-hydrolase -
  I6I26_RS06270 (I6I26_06270) comGA 1266813..1267787 (+) 975 WP_126568109.1 competence type IV pilus ATPase ComGA Machinery gene
  I6I26_RS06275 (I6I26_06275) - 1267759..1268649 (+) 891 WP_126568111.1 type II secretion system F family protein -
  I6I26_RS06280 (I6I26_06280) comGC 1268673..1268984 (+) 312 WP_029055749.1 competence type IV pilus major pilin ComGC Machinery gene
  I6I26_RS06285 (I6I26_06285) comGD 1268974..1269411 (+) 438 WP_046466732.1 competence type IV pilus minor pilin ComGD -
  I6I26_RS06290 (I6I26_06290) - 1269458..1269691 (+) 234 WP_200271262.1 hypothetical protein -
  I6I26_RS06295 (I6I26_06295) - 1270265..1270783 (+) 519 WP_182725463.1 shikimate kinase -
  I6I26_RS06300 (I6I26_06300) gcvT 1270955..1272046 (+) 1092 WP_126567392.1 glycine cleavage system aminomethyltransferase GcvT -
  I6I26_RS06305 (I6I26_06305) gcvPA 1272065..1273414 (+) 1350 WP_046466728.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11485.49 Da        Isoelectric Point: 8.5268

>NTDB_id=524419 I6I26_RS06280 WP_029055749.1 1268673..1268984(+) (comGC) [Staphylococcus pasteuri strain FDAARGOS_1069]
MFKTLFNKKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQTTGCDAQVKMVNSQIEAYTLKHNRNPNTIQDLISEGFI
KENQKNCKSGETISINNGEAVAN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=524419 I6I26_RS06280 WP_029055749.1 1268673..1268984(+) (comGC) [Staphylococcus pasteuri strain FDAARGOS_1069]
ATATTCAAAACACTGTTTAACAAAAAGGCATTTACATTAATTGAAATGTTACTAGTTTTATTAATAATTAGCTTATTGCT
TATTCTAATTATTCCCAATATAGCTAAACAAACCGCTCATATACAAACTACTGGTTGTGACGCTCAAGTGAAAATGGTTA
ATAGTCAAATTGAAGCATATACTTTAAAACACAATAGAAATCCTAATACCATCCAAGATTTAATTTCTGAAGGATTTATT
AAAGAAAACCAAAAAAATTGCAAATCAGGAGAAACTATTAGTATTAATAATGGCGAAGCGGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

83.495

100

0.835
  comGC Staphylococcus aureus MW2

83.495

100

0.835
  comYC Streptococcus gordonii str. Challis substr. CH1

45.361

94.175

0.427
  comGC Bacillus subtilis subsp. subtilis str. 168

43.617

91.262

0.398
  comGC/cglC Streptococcus pneumoniae R6

43.478

89.32

0.388
  comGC/cglC Streptococcus pneumoniae TIGR4

43.478

89.32

0.388
  comGC/cglC Streptococcus pneumoniae Rx1

43.478

89.32

0.388
  comGC/cglC Streptococcus pneumoniae D39

43.478

89.32

0.388
  comGC/cglC Streptococcus mitis NCTC 12261

42.105

92.233

0.388
  comYC Streptococcus suis isolate S10

51.316

73.786

0.379
  comYC Streptococcus mutans UA140

48.101

76.699

0.369
  comYC Streptococcus mutans UA159

48.101

76.699

0.369