Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JHX98_RS00980 Genome accession   NZ_CP067010
Coordinates   154003..154398 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain iGAS376     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 149003..159398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHX98_RS00950 (JHX98_00950) - 149869..150177 (+) 309 WP_011017251.1 hypothetical protein -
  JHX98_RS00955 (JHX98_00955) proC 150260..151030 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  JHX98_RS00960 (JHX98_00960) pepA 151078..152145 (-) 1068 WP_011184093.1 glutamyl aminopeptidase -
  JHX98_RS00965 (JHX98_00965) - 152610..152894 (+) 285 WP_011888537.1 DUF4651 domain-containing protein -
  JHX98_RS00970 (JHX98_00970) - 152891..153208 (+) 318 WP_011888538.1 thioredoxin family protein -
  JHX98_RS00975 (JHX98_00975) ytpR 153226..153852 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  JHX98_RS00980 (JHX98_00980) ssbA 154003..154398 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  JHX98_RS00985 (JHX98_00985) - 154658..155299 (-) 642 WP_011888539.1 deoxynucleoside kinase -
  JHX98_RS00990 (JHX98_00990) dusB 155319..156296 (-) 978 WP_011888540.1 tRNA dihydrouridine synthase DusB -
  JHX98_RS00995 (JHX98_00995) hslO 156283..157155 (-) 873 WP_076640834.1 Hsp33 family molecular chaperone HslO -
  JHX98_RS01000 (JHX98_01000) nra 157281..158816 (-) 1536 WP_011888542.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=524321 JHX98_RS00980 WP_003053955.1 154003..154398(+) (ssbA) [Streptococcus pyogenes strain iGAS376]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=524321 JHX98_RS00980 WP_003053955.1 154003..154398(+) (ssbA) [Streptococcus pyogenes strain iGAS376]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACCGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397