Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   JH288_RS05680 Genome accession   NZ_CP066997
Coordinates   1336773..1337192 (+) Length   139 a.a.
NCBI ID   WP_116670568.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain 33-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1337237..1338369 1336773..1337192 flank 45


Gene organization within MGE regions


Location: 1336773..1338369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JH288_RS05680 (JH288_05655) pilA2 1336773..1337192 (+) 420 WP_116670568.1 pilin Machinery gene

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14040.23 Da        Isoelectric Point: 9.0169

>NTDB_id=524059 JH288_RS05680 WP_116670568.1 1336773..1337192(+) (pilA2) [Xanthomonas campestris pv. campestris strain 33-1]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYLIKARVSEVVLAASSARTTVSEAAAADTGTAMPAAVTIESQASKYVA
SVAYAGGTTNGIITAISKDLGGTATGTITLTGTKSTNGQVAWVCGGTIPAKYRPATCQG

Nucleotide


Download         Length: 420 bp        

>NTDB_id=524059 JH288_RS05680 WP_116670568.1 1336773..1337192(+) (pilA2) [Xanthomonas campestris pv. campestris strain 33-1]
ATGAAGAAGCAACAAGGTTTTACCCTGATTGAATTGATGATCGTCGTGGCCATCATTGCCATTCTTGCCGCTATCGCGCT
GCCGGCCTATCAGGATTACCTGATCAAGGCTCGCGTATCCGAGGTGGTTCTGGCTGCATCTTCCGCGCGTACTACAGTTT
CTGAAGCCGCGGCGGCTGACACTGGTACGGCCATGCCTGCCGCAGTTACGATTGAGAGCCAGGCGTCCAAGTACGTAGCA
TCTGTTGCTTATGCCGGCGGCACCACAAATGGTATTATCACTGCAATCTCCAAGGATCTTGGCGGTACTGCTACTGGAAC
GATTACGTTGACTGGTACCAAGTCTACTAATGGACAGGTCGCCTGGGTCTGTGGCGGCACGATCCCGGCTAAGTATCGTC
CGGCAACTTGCCAGGGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-138)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila strain ERS1305867

52.817

100

0.54
  pilA2 Legionella pneumophila str. Paris

53.191

100

0.54
  comP Acinetobacter baylyi ADP1

46.98

100

0.504
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

38.043

100

0.504
  pilA Ralstonia pseudosolanacearum GMI1000

40.491

100

0.475
  pilA/pilA1 Eikenella corrodens VA1

40.132

100

0.439
  pilE Neisseria gonorrhoeae MS11

36.25

100

0.417
  pilE Neisseria gonorrhoeae strain FA1090

35.404

100

0.41
  pilA Vibrio parahaemolyticus RIMD 2210633

39.13

99.281

0.388
  pilA Acinetobacter baumannii strain A118

37.857

100

0.381