Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JF649_RS00720 Genome accession   NZ_CP066541
Coordinates   112263..112658 (+) Length   131 a.a.
NCBI ID   WP_046177419.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS270     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107263..117658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF649_RS00690 (JF649_00695) - 108129..108437 (+) 309 WP_111677000.1 hypothetical protein -
  JF649_RS00695 (JF649_00700) proC 108520..109290 (-) 771 WP_129321639.1 pyrroline-5-carboxylate reductase -
  JF649_RS00700 (JF649_00705) pepA 109338..110405 (-) 1068 WP_115219557.1 glutamyl aminopeptidase -
  JF649_RS00705 (JF649_00710) - 110870..111154 (+) 285 WP_002992749.1 DUF4651 domain-containing protein -
  JF649_RS00710 (JF649_00715) - 111151..111468 (+) 318 WP_002986515.1 thioredoxin family protein -
  JF649_RS00715 (JF649_00720) ytpR 111486..112112 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  JF649_RS00720 (JF649_00725) ssbA 112263..112658 (+) 396 WP_046177419.1 single-stranded DNA-binding protein Machinery gene
  JF649_RS00725 (JF649_00730) - 112918..113559 (-) 642 WP_046177420.1 deoxynucleoside kinase -
  JF649_RS00730 (JF649_00735) dusB 113579..114556 (-) 978 WP_002987812.1 tRNA dihydrouridine synthase DusB -
  JF649_RS00735 (JF649_00740) hslO 114543..115415 (-) 873 WP_002986499.1 Hsp33 family molecular chaperone HslO -
  JF649_RS00740 (JF649_00745) rofA 115562..117055 (-) 1494 WP_129321640.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14786.97 Da        Isoelectric Point: 8.8846

>NTDB_id=520672 JF649_RS00720 WP_046177419.1 112263..112658(+) (ssbA) [Streptococcus pyogenes strain MGAS270]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYNKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=520672 JF649_RS00720 WP_046177419.1 112263..112658(+) (ssbA) [Streptococcus pyogenes strain MGAS270]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACTCGC
AAGTATAATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405