Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SMUGS5_RS08425 Genome accession   NC_018089
Coordinates   1741903..1742397 (-) Length   164 a.a.
NCBI ID   WP_002261867.1    Uniprot ID   A0AAX1K2T1
Organism   Streptococcus mutans GS-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1736903..1747397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS08395 (SMUGS5_08340) - 1737522..1738466 (+) 945 WP_002273461.1 magnesium transporter CorA family protein -
  SMUGS5_RS08400 (SMUGS5_08345) - 1738748..1739410 (+) 663 WP_002298581.1 DUF1129 domain-containing protein -
  SMUGS5_RS08405 (SMUGS5_08350) hdrR 1739549..1739905 (+) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  SMUGS5_RS08410 (SMUGS5_08355) hdrM 1739902..1740588 (+) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  SMUGS5_RS08415 (SMUGS5_08360) - 1740596..1741315 (-) 720 WP_002273460.1 TraX family protein -
  SMUGS5_RS08420 (SMUGS5_08365) rpsR 1741634..1741873 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SMUGS5_RS08425 (SMUGS5_08370) ssbA 1741903..1742397 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  SMUGS5_RS08430 (SMUGS5_08375) rpsF 1742415..1742705 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  SMUGS5_RS08435 (SMUGS5_08380) - 1742861..1743106 (-) 246 WP_002263367.1 hypothetical protein -
  SMUGS5_RS10495 (SMUGS5_08385) - 1743410..1743580 (+) 171 WP_014835034.1 hypothetical protein -
  SMUGS5_RS08440 (SMUGS5_08390) mutY 1744651..1745796 (+) 1146 WP_014835035.1 A/G-specific adenine glycosylase -
  SMUGS5_RS08445 (SMUGS5_08395) - 1745988..1747037 (-) 1050 WP_014835036.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.97 Da        Isoelectric Point: 4.7187

>NTDB_id=52050 SMUGS5_RS08425 WP_002261867.1 1741903..1742397(-) (ssbA) [Streptococcus mutans GS-5]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=52050 SMUGS5_RS08425 WP_002261867.1 1741903..1742397(-) (ssbA) [Streptococcus mutans GS-5]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACCCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssb Glaesserella parasuis strain SC1401

32.62

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

69.512

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366

Multiple sequence alignment