Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   SMUGS5_RS08410 Genome accession   NC_018089
Coordinates   1739902..1740588 (+) Length   228 a.a.
NCBI ID   WP_002268420.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734902..1745588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS08390 (SMUGS5_08335) - 1736901..1737122 (+) 222 WP_019313410.1 hypothetical protein -
  SMUGS5_RS08395 (SMUGS5_08340) - 1737522..1738466 (+) 945 WP_002273461.1 magnesium transporter CorA family protein -
  SMUGS5_RS08400 (SMUGS5_08345) - 1738748..1739410 (+) 663 WP_002298581.1 DUF1129 domain-containing protein -
  SMUGS5_RS08405 (SMUGS5_08350) hdrR 1739549..1739905 (+) 357 WP_002262669.1 LytTR family transcriptional regulator HdrR Regulator
  SMUGS5_RS08410 (SMUGS5_08355) hdrM 1739902..1740588 (+) 687 WP_002268420.1 hdrR negative regulator HdrM Regulator
  SMUGS5_RS08415 (SMUGS5_08360) - 1740596..1741315 (-) 720 WP_002273460.1 TraX family protein -
  SMUGS5_RS08420 (SMUGS5_08365) rpsR 1741634..1741873 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SMUGS5_RS08425 (SMUGS5_08370) ssbA 1741903..1742397 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  SMUGS5_RS08430 (SMUGS5_08375) rpsF 1742415..1742705 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  SMUGS5_RS08435 (SMUGS5_08380) - 1742861..1743106 (-) 246 WP_002263367.1 hypothetical protein -
  SMUGS5_RS10495 (SMUGS5_08385) - 1743410..1743580 (+) 171 WP_014835034.1 hypothetical protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26101.17 Da        Isoelectric Point: 6.7581

>NTDB_id=52049 SMUGS5_RS08410 WP_002268420.1 1739902..1740588(+) (hdrM) [Streptococcus mutans GS-5]
MKKNYFWYGLLGLLALYLITIAFIPGFHIFFSNMLMLALFFMLIALSNRSIFFFFLALGFLSIYLKDIFHFDYSTGPLFT
GIIIIGVILNSFLKPHYSYSYKGNHYFNMKQNANYIDNETDVFLKTLFSENTSYVTSQELNKIIIDTKFGEQSVDLSQAQ
FMTDSPEIHIDISFGETNLRIPNNWKIINKTHSPFASISFSGFPSTNGDFINVTLTGTVAMGSLNIQY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=52049 SMUGS5_RS08410 WP_002268420.1 1739902..1740588(+) (hdrM) [Streptococcus mutans GS-5]
ATGAAAAAAAATTATTTTTGGTACGGTCTGCTTGGGCTTCTCGCACTTTACCTTATTACTATTGCTTTTATCCCGGGATT
TCATATTTTCTTTAGCAACATGTTGATGTTGGCCCTGTTCTTTATGTTAATAGCTTTGAGTAACAGGAGTATCTTCTTTT
TCTTTCTAGCCTTAGGTTTTCTTAGTATCTACTTGAAAGATATCTTTCATTTTGACTATTCTACCGGACCGCTTTTTACG
GGTATAATCATTATCGGCGTTATCTTAAATAGTTTCCTCAAACCACACTATTCTTATTCTTATAAAGGAAATCATTATTT
TAATATGAAACAAAATGCTAACTACATTGATAACGAAACAGATGTCTTTTTAAAAACACTTTTTTCTGAAAATACCAGTT
ATGTGACTTCTCAAGAATTAAATAAAATTATTATTGATACTAAGTTTGGAGAACAATCTGTTGATCTCTCTCAAGCTCAA
TTTATGACGGATTCTCCCGAAATTCATATAGATATTAGCTTTGGTGAAACCAATCTGCGTATTCCAAACAACTGGAAAAT
CATCAATAAAACTCACTCTCCCTTTGCTTCCATTTCATTTTCAGGTTTTCCTAGCACAAATGGTGATTTTATTAACGTTA
CATTGACTGGAACAGTGGCTATGGGATCTCTAAACATTCAATATTAA

Domains

Predicted by InterproScan.

Cell wall-active antibiotics response 4TMS YvqF (LiaF-like_C)

(128-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

99.123

100

0.991

Multiple sequence alignment