Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IGS65_RS09160 Genome accession   NZ_CP066294
Coordinates   1885974..1886468 (+) Length   164 a.a.
NCBI ID   WP_002261867.1    Uniprot ID   A0AAX1K2T1
Organism   Streptococcus mutans strain 27-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1880974..1891468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS09140 (IGS65_009140) - 1881328..1882377 (+) 1050 WP_192072395.1 zinc-dependent alcohol dehydrogenase family protein -
  IGS65_RS09145 (IGS65_009145) mutY 1882569..1883714 (-) 1146 WP_002264191.1 A/G-specific adenine glycosylase -
  IGS65_RS09150 (IGS65_009150) - 1885265..1885510 (+) 246 WP_002276385.1 hypothetical protein -
  IGS65_RS09155 (IGS65_009155) rpsF 1885666..1885956 (+) 291 WP_002276384.1 30S ribosomal protein S6 -
  IGS65_RS09160 (IGS65_009160) ssbA 1885974..1886468 (+) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  IGS65_RS09165 (IGS65_009165) rpsR 1886498..1886737 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  IGS65_RS09170 (IGS65_009170) - 1887056..1887775 (+) 720 WP_192072394.1 TraX family protein -
  IGS65_RS09175 (IGS65_009175) hdrM 1887783..1888469 (-) 687 WP_192072393.1 hdrR negative regulator HdrM Regulator
  IGS65_RS09180 (IGS65_009180) hdrR 1888466..1888822 (-) 357 WP_002268419.1 LytTR family transcriptional regulator HdrR Regulator
  IGS65_RS09185 (IGS65_009185) - 1888961..1889623 (-) 663 WP_002265267.1 DUF1129 domain-containing protein -
  IGS65_RS09190 (IGS65_009190) - 1889760..1890704 (-) 945 WP_192072392.1 magnesium transporter CorA family protein -
  IGS65_RS09195 (IGS65_009195) - 1891104..1891326 (-) 223 Protein_1781 hypothetical protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.97 Da        Isoelectric Point: 4.7187

>NTDB_id=519167 IGS65_RS09160 WP_002261867.1 1885974..1886468(+) (ssbA) [Streptococcus mutans strain 27-3]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=519167 IGS65_RS09160 WP_002261867.1 1885974..1886468(+) (ssbA) [Streptococcus mutans strain 27-3]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssb Glaesserella parasuis strain SC1401

32.62

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

69.512

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366