Detailed information NTG0051899

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: SCIM_RS08235
• Genome accession: NC_018073
• Coordinates: 1700499..1700816 (-)
• Length: 105 a.a.
• NCBI ID: WP_003075998.1
• Uniprot ID: A0AAE8G310
• Organism: Streptococcus intermedius JTH08
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1695499..1705816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS08205 (SCIM_1488)	-	1696828..1698027 (-)	1200	WP_003076127.1	acetate kinase	-
SCIM_RS08210 (SCIM_1489)	comYH	1698074..1699027 (-)	954	WP_003075742.1	class I SAM-dependent methyltransferase	Machinery gene
SCIM_RS08215 (SCIM_1490)	comGG	1699118..1699444 (-)	327	WP_014829817.1	competence type IV pilus minor pilin ComGG	-
SCIM_RS08220 (SCIM_1491)	comGF/cglF	1699425..1699862 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
SCIM_RS08225 (SCIM_1492)	comGE/cglE	1699846..1700139 (-)	294	WP_003073987.1	competence type IV pilus minor pilin ComGE	Machinery gene
SCIM_RS08230 (SCIM_1493)	comYD	1700111..1700539 (-)	429	WP_014829819.1	competence type IV pilus minor pilin ComGD	Machinery gene
SCIM_RS08235 (SCIM_1494)	comYC	1700499..1700816 (-)	318	WP_003075998.1	competence type IV pilus major pilin ComGC	Machinery gene
SCIM_RS08240 (SCIM_1495)	comYB	1700813..1701835 (-)	1023	WP_172634362.1	competence type IV pilus assembly protein ComGB	Machinery gene
SCIM_RS08245 (SCIM_1497)	comYA	1701777..1702718 (-)	942	WP_003073980.1	competence type IV pilus ATPase ComGA	Machinery gene
SCIM_RS08250 (SCIM_1498)	-	1702787..1703152 (-)	366	WP_003075933.1	DUF1033 family protein	-
SCIM_RS08255 (SCIM_1499)	glnA	1703374..1704720 (-)	1347	WP_003076201.1	type I glutamate--ammonia ligase	-
SCIM_RS08260 (SCIM_1500)	-	1704759..1705118 (-)	360	WP_003073972.1	MerR family transcriptional regulator	-
SCIM_RS08265 (SCIM_1501)	-	1705195..1705725 (-)	531	WP_003073971.1	FUSC family protein	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11666.77 Da
• Isoelectric Point: 10.1006

>NTDB_id=51899 SCIM_RS08235 WP_003075998.1 1700499..1700816(-) (comYC) [Streptococcus intermedius JTH08]
MKKIKNLKVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVTEKGNAAVVKVVESQAELFEVNHSNEKATLSKLVTEGT
ITDKQAASYKAYYAKHTKETRSVAD

Nucleotide

• Length: 318 bp

>NTDB_id=51899 SCIM_RS08235 WP_003075998.1 1700499..1700816(-) (comYC) [Streptococcus intermedius JTH08]
GTGAAAAAAATTAAAAATTTGAAGGTTAAAGCTTTTACTTTAGTGGAAATGTTGGTTGTGCTTTTAATCATTAGTGTTTT
AATGCTCTTATTTGTGCCGAATTTGACCAAGCAAAAGGAAGCAGTAACAGAAAAAGGAAATGCAGCTGTGGTCAAAGTTG
TAGAGAGCCAAGCGGAACTTTTCGAGGTCAATCATAGCAATGAAAAAGCAACGCTTTCAAAATTAGTCACTGAAGGCACG
ATTACAGATAAGCAGGCAGCGTCATATAAGGCTTACTATGCGAAACATACAAAAGAAACTCGTTCTGTTGCAGATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus gordonii str. Challis substr. CH1	73.333	100	0.733
comYC	Streptococcus mutans UA140	68.571	100	0.686
comYC	Streptococcus mutans UA159	68.571	100	0.686
comGC/cglC	Streptococcus mitis NCTC 12261	68.627	97.143	0.667
comGC/cglC	Streptococcus mitis SK321	68.627	97.143	0.667
comGC/cglC	Streptococcus pneumoniae Rx1	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae D39	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae TIGR4	66.667	97.143	0.648
comGC/cglC	Streptococcus pneumoniae R6	66.667	97.143	0.648
comGC	Lactococcus lactis subsp. cremoris KW2	54.808	99.048	0.543
comYC	Streptococcus suis isolate S10	64.045	84.762	0.543