Detailed information NTG0051895

Bioinformatically predicted

Overview

• Name: comYH
• Type: Machinery gene
• Locus tag: SCIM_RS08210
• Genome accession: NC_018073
• Coordinates: 1698074..1699027 (-)
• Length: 317 a.a.
• NCBI ID: WP_003075742.1
• Uniprot ID: -
• Organism: Streptococcus intermedius JTH08
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1693074..1704027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS08200 (SCIM_1487)	glmS	1694632..1696446 (-)	1815	WP_003076077.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
SCIM_RS08205 (SCIM_1488)	-	1696828..1698027 (-)	1200	WP_003076127.1	acetate kinase	-
SCIM_RS08210 (SCIM_1489)	comYH	1698074..1699027 (-)	954	WP_003075742.1	class I SAM-dependent methyltransferase	Machinery gene
SCIM_RS08215 (SCIM_1490)	comGG	1699118..1699444 (-)	327	WP_014829817.1	competence type IV pilus minor pilin ComGG	-
SCIM_RS08220 (SCIM_1491)	comGF/cglF	1699425..1699862 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
SCIM_RS08225 (SCIM_1492)	comGE/cglE	1699846..1700139 (-)	294	WP_003073987.1	competence type IV pilus minor pilin ComGE	Machinery gene
SCIM_RS08230 (SCIM_1493)	comYD	1700111..1700539 (-)	429	WP_014829819.1	competence type IV pilus minor pilin ComGD	Machinery gene
SCIM_RS08235 (SCIM_1494)	comYC	1700499..1700816 (-)	318	WP_003075998.1	competence type IV pilus major pilin ComGC	Machinery gene
SCIM_RS08240 (SCIM_1495)	comYB	1700813..1701835 (-)	1023	WP_172634362.1	competence type IV pilus assembly protein ComGB	Machinery gene
SCIM_RS08245 (SCIM_1497)	comYA	1701777..1702718 (-)	942	WP_003073980.1	competence type IV pilus ATPase ComGA	Machinery gene
SCIM_RS08250 (SCIM_1498)	-	1702787..1703152 (-)	366	WP_003075933.1	DUF1033 family protein	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 36077.03 Da
• Isoelectric Point: 4.4688

>NTDB_id=51895 SCIM_RS08210 WP_003075742.1 1698074..1699027(-) (comYH) [Streptococcus intermedius JTH08]
MNFEKIEQAYTLLLENIQEIQNDLLTNFYDALVEQNGIYLDGKTELATVKKNNEILNSLKLSKEEWRRSYQFLLMKAAQT
EPLQANHQFTPDSIGFIVTFLIDQLSNKEHIDVLEIGSGMGNLSETILNNTKKNVDYLGLELDDLLIDVSASIADVMDAK
VSFVQGDAVRPQVLKESDVIVSDLPIGYYPDDYIASRYEVASTQEHTYAHHLLMEQSLKYLKPGGYAIFLAPNNLLTSRQ
SQLLKNWLQKYVQIVAMIALPESLFGNAAYAKTIFVLKKQDEQAIQSFVYALTDLQNQAALLTFSEKFQNWRQESEI

Nucleotide

• Length: 954 bp

>NTDB_id=51895 SCIM_RS08210 WP_003075742.1 1698074..1699027(-) (comYH) [Streptococcus intermedius JTH08]
ATGAATTTTGAAAAAATTGAACAGGCCTATACGCTCCTGTTAGAAAATATCCAAGAAATCCAAAATGATCTTTTAACGAA
TTTTTATGATGCCTTGGTAGAGCAAAACGGGATTTATCTGGATGGAAAGACAGAGCTAGCCACTGTCAAAAAAAATAATG
AAATACTAAACTCTTTGAAATTAAGTAAAGAAGAATGGCGCAGGAGCTACCAATTTTTACTGATGAAAGCGGCTCAAACG
GAGCCTTTGCAAGCCAATCATCAATTTACTCCGGATTCTATTGGTTTTATCGTAACATTTCTCATTGACCAATTGAGTAA
TAAAGAACATATTGATGTTTTGGAAATTGGTAGCGGAATGGGGAATTTATCAGAGACCATTCTCAATAATACAAAGAAAA
ATGTGGATTACCTAGGACTAGAATTGGACGATTTGTTAATTGATGTATCAGCTAGCATAGCAGATGTGATGGATGCAAAG
GTTAGTTTTGTACAAGGTGATGCAGTGCGCCCACAAGTATTAAAAGAAAGTGATGTGATTGTTAGCGATTTGCCGATTGG
CTATTATCCGGATGATTACATTGCATCGCGCTATGAAGTGGCTAGTACGCAAGAGCATACCTATGCCCATCATTTGTTAA
TGGAACAATCGCTCAAGTATCTGAAACCAGGCGGTTATGCGATATTTCTTGCGCCAAATAATTTATTAACTAGTAGGCAG
AGTCAATTATTGAAAAATTGGTTGCAAAAGTATGTTCAGATAGTTGCAATGATTGCGTTGCCGGAATCCCTTTTTGGAAA
TGCAGCGTATGCCAAAACAATTTTTGTGCTCAAAAAGCAAGACGAACAAGCTATTCAGTCATTTGTTTATGCTTTGACTG
ATTTACAAAATCAAGCTGCCTTATTGACTTTTAGCGAAAAATTCCAAAATTGGAGGCAAGAAAGTGAAATTTAA

Domains

Predicted by InterproScan.

• N-6 DNA Methylase (N6_Mtase) (69-286)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYH	Streptococcus mutans UA140	60.635	99.369	0.603
comYH	Streptococcus mutans UA159	60.317	99.369	0.599