Detailed information NTG0051896

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: SCIM_RS08220
• Genome accession: NC_018073
• Coordinates: 1699425..1699862 (-)
• Length: 145 a.a.
• NCBI ID: WP_003073990.1
• Uniprot ID: -
• Organism: Streptococcus intermedius JTH08
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1694425..1704862

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS08200 (SCIM_1487)	glmS	1694632..1696446 (-)	1815	WP_003076077.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
SCIM_RS08205 (SCIM_1488)	-	1696828..1698027 (-)	1200	WP_003076127.1	acetate kinase	-
SCIM_RS08210 (SCIM_1489)	comYH	1698074..1699027 (-)	954	WP_003075742.1	class I SAM-dependent methyltransferase	Machinery gene
SCIM_RS08215 (SCIM_1490)	comGG	1699118..1699444 (-)	327	WP_014829817.1	competence type IV pilus minor pilin ComGG	-
SCIM_RS08220 (SCIM_1491)	comGF/cglF	1699425..1699862 (-)	438	WP_003073990.1	competence type IV pilus minor pilin ComGF	Machinery gene
SCIM_RS08225 (SCIM_1492)	comGE/cglE	1699846..1700139 (-)	294	WP_003073987.1	competence type IV pilus minor pilin ComGE	Machinery gene
SCIM_RS08230 (SCIM_1493)	comYD	1700111..1700539 (-)	429	WP_014829819.1	competence type IV pilus minor pilin ComGD	Machinery gene
SCIM_RS08235 (SCIM_1494)	comYC	1700499..1700816 (-)	318	WP_003075998.1	competence type IV pilus major pilin ComGC	Machinery gene
SCIM_RS08240 (SCIM_1495)	comYB	1700813..1701835 (-)	1023	WP_172634362.1	competence type IV pilus assembly protein ComGB	Machinery gene
SCIM_RS08245 (SCIM_1497)	comYA	1701777..1702718 (-)	942	WP_003073980.1	competence type IV pilus ATPase ComGA	Machinery gene
SCIM_RS08250 (SCIM_1498)	-	1702787..1703152 (-)	366	WP_003075933.1	DUF1033 family protein	-
SCIM_RS08255 (SCIM_1499)	glnA	1703374..1704720 (-)	1347	WP_003076201.1	type I glutamate--ammonia ligase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16858.51 Da
• Isoelectric Point: 10.2149

>NTDB_id=51896 SCIM_RS08220 WP_003073990.1 1699425..1699862(-) (comGF/cglF) [Streptococcus intermedius JTH08]
MFKANKVKAFTLLEALIALFVLSGSVLLFQSMTRLLASEVQTRQHSEQREWLLFADQLEVELTRSSFEKVENNRLYMKQD
GKVIAFGKASGQDFRKTNANGKGYQPMVYDVKKAEISQENELVRIRLLFKRGLEREFIYRVETKS

Nucleotide

• Length: 438 bp

>NTDB_id=51896 SCIM_RS08220 WP_003073990.1 1699425..1699862(-) (comGF/cglF) [Streptococcus intermedius JTH08]
GTGTTCAAAGCAAATAAAGTAAAAGCTTTTACACTTTTAGAGGCTCTGATTGCCCTATTCGTACTCAGTGGAAGTGTGTT
GCTATTTCAATCTATGACGCGTCTTCTGGCTTCTGAAGTCCAAACTCGACAACACAGTGAACAGCGAGAATGGCTTTTGT
TTGCCGATCAACTAGAAGTGGAGTTGACGCGTTCTTCATTTGAAAAAGTGGAGAATAATCGTTTATACATGAAGCAAGAT
GGTAAGGTAATTGCATTTGGAAAAGCAAGTGGACAAGATTTCAGGAAAACCAATGCGAATGGGAAAGGTTATCAGCCCAT
GGTTTATGATGTGAAAAAAGCAGAAATTTCACAGGAAAATGAGCTGGTTCGTATTCGATTACTGTTTAAGAGAGGATTGG
AAAGGGAATTCATCTATCGTGTGGAAACAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (38-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae R6	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae TIGR4	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae Rx1	68.571	96.552	0.662
comGF/cglF	Streptococcus pneumoniae D39	68.571	96.552	0.662
comGF/cglF	Streptococcus mitis NCTC 12261	67.857	96.552	0.655
comGF/cglF	Streptococcus mitis SK321	67.857	96.552	0.655
comYF	Streptococcus mutans UA159	41.135	97.241	0.4
comYF	Streptococcus mutans UA140	41.135	97.241	0.4
comGF	Lactococcus lactis subsp. cremoris KW2	42.963	93.103	0.4