Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SCIM_RS08085 Genome accession   NC_018073
Coordinates   1669227..1669622 (-) Length   131 a.a.
NCBI ID   WP_003075951.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1664227..1674622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS08065 (SCIM_1461) - 1664752..1666038 (-) 1287 WP_003075758.1 ABC transporter substrate-binding protein -
  SCIM_RS08070 (SCIM_1462) - 1666035..1666718 (-) 684 WP_003076096.1 response regulator transcription factor -
  SCIM_RS08075 (SCIM_1463) - 1666711..1668024 (-) 1314 WP_003075992.1 sensor histidine kinase -
  SCIM_RS08080 (SCIM_1464) - 1668024..1669010 (-) 987 WP_003075756.1 sugar ABC transporter substrate-binding protein -
  SCIM_RS08085 (SCIM_1465) ssbB/cilA 1669227..1669622 (-) 396 WP_003075951.1 single-stranded DNA-binding protein Machinery gene
  SCIM_RS08090 (SCIM_1466) ytpR 1669694..1670320 (-) 627 WP_003076063.1 YtpR family tRNA-binding protein -
  SCIM_RS08095 (SCIM_1467) - 1670337..1670654 (-) 318 WP_003074074.1 thioredoxin family protein -
  SCIM_RS08100 (SCIM_1468) - 1670651..1670938 (-) 288 WP_003074072.1 DUF4651 domain-containing protein -
  SCIM_RS08105 (SCIM_1469) pepA 1671058..1672122 (+) 1065 WP_016670409.1 glutamyl aminopeptidase -
  SCIM_RS08110 (SCIM_1470) - 1672413..1672973 (-) 561 WP_003075897.1 folate family ECF transporter S component -
  SCIM_RS08115 (SCIM_1472) - 1673155..1674459 (-) 1305 WP_037589417.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14759.70 Da        Isoelectric Point: 5.9381

>NTDB_id=51892 SCIM_RS08085 WP_003075951.1 1669227..1669622(-) (ssbB/cilA) [Streptococcus intermedius JTH08]
MYNKVILIGRLVNTPEVNKTANDKSVVRATLAINRRYKGQNGEREADFVNVVVWGKLAETLTSYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=51892 SCIM_RS08085 WP_003075951.1 1669227..1669622(-) (ssbB/cilA) [Streptococcus intermedius JTH08]
ATGTATAATAAAGTAATTTTAATTGGTCGCTTGGTTAATACACCAGAGGTAAATAAAACAGCTAATGATAAATCTGTGGT
ACGTGCAACACTTGCCATCAACCGTCGCTATAAAGGGCAAAATGGCGAACGAGAAGCAGATTTTGTAAATGTCGTTGTTT
GGGGAAAGTTAGCTGAAACCTTAACAAGTTATGCAACAAAAGGAAGTTTAATATCTCTTGATGGAGAACTTCGTACCCGC
CGCTATGAGAAAGACGGTGTGACACATTATGTAACGGAAGTGCTTTGCAATGGCTTCCAGCTATTAGAAAGTCGTGCCCA
ACGAGCGCTTCGTGAAAATAATACAGGCGCAGATTTAGCAGATTTGGTTTTGGAAGAAGAAGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

81.679

100

0.817
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae Rx1

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae D39

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

80.916

100

0.809
  ssbB/cilA Streptococcus mitis SK321

80.916

100

0.809
  ssbA Streptococcus mutans UA159

78.626

100

0.786
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

43.363

86.26

0.374
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374

Multiple sequence alignment