Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SCIM_RS01485 Genome accession   NC_018073
Coordinates   300133..300603 (+) Length   156 a.a.
NCBI ID   WP_003074535.1    Uniprot ID   A0AAE8KBG2
Organism   Streptococcus intermedius JTH08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 295133..305603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS01445 (SCIM_0251) - 295156..295458 (+) 303 WP_003077585.1 DUF4176 domain-containing protein -
  SCIM_RS01450 (SCIM_0252) - 295470..295862 (+) 393 WP_003077724.1 hypothetical protein -
  SCIM_RS01455 - 295872..296153 (+) 282 WP_003077760.1 hypothetical protein -
  SCIM_RS01460 (SCIM_0253) - 296168..296467 (+) 300 WP_003077672.1 hypothetical protein -
  SCIM_RS01465 (SCIM_0254) - 296490..297797 (+) 1308 WP_003077710.1 hypothetical protein -
  SCIM_RS01470 (SCIM_0255) - 297807..298643 (+) 837 WP_003077839.1 hypothetical protein -
  SCIM_RS01475 (SCIM_0256) - 298712..299542 (+) 831 WP_003077480.1 hypothetical protein -
  SCIM_RS01480 (SCIM_0257) rpsF 299831..300121 (+) 291 WP_003077639.1 30S ribosomal protein S6 -
  SCIM_RS01485 (SCIM_0258) ssbA 300133..300603 (+) 471 WP_003074535.1 single-stranded DNA-binding protein Machinery gene
  SCIM_RS01490 (SCIM_0259) rpsR 300640..300879 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  SCIM_RS01495 (SCIM_0260) - 301288..301806 (+) 519 Protein_281 GNAT family N-acetyltransferase -
  SCIM_RS01500 (SCIM_0261) - 301958..302635 (-) 678 WP_003077758.1 DUF1129 domain-containing protein -
  SCIM_RS01505 (SCIM_0262) - 302651..303595 (-) 945 WP_003070861.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17465.18 Da        Isoelectric Point: 4.9008

>NTDB_id=51849 SCIM_RS01485 WP_003074535.1 300133..300603(+) (ssbA) [Streptococcus intermedius JTH08]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYTSNNFGSSPSANQVPNFSRDENPFGNTNPMDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=51849 SCIM_RS01485 WP_003074535.1 300133..300603(+) (ssbA) [Streptococcus intermedius JTH08]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACGCCGCAAAATCAAGCGGTCGC
AACTTTTACTCTTGCTGTTAATCGCAACTTTAAAAATCAAAGTGGCGAGAGAGAAGCAGATTTTATTAACGTTGTAATTT
GGCGCCAACAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTTATCGGAGTTACTGGTCGCATTCAGACACGT
AACTACGAAAATCAGCAAGGTCAACGTGTCTATGTGACAGAAGTCGTAGCGGATAATTTTCAGTTATTGGAAAGTCGCGC
TAGTCGTGAAGGTCAATCTTCTGGCGGCTATACTTCTAACAATTTTGGAAGTTCACCTTCTGCCAACCAAGTACCCAACT
TTTCTCGTGATGAAAATCCATTTGGGAATACCAATCCAATGGACATCTCAGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.66
  ssb Latilactobacillus sakei subsp. sakei 23K

56.571

100

0.635
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.949

0.391
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

69.872

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

69.872

0.378
  ssbB/cilA Streptococcus mitis SK321

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae D39

53.211

69.872

0.372
  ssbB/cilA Streptococcus pneumoniae R6

53.211

69.872

0.372

Multiple sequence alignment