Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JC616_RS02170 Genome accession   NZ_CP066126
Coordinates   491889..492968 (-) Length   359 a.a.
NCBI ID   WP_107797867.1    Uniprot ID   A0A2T5NDK6
Organism   Chromobacterium rhizoryzae strain 32279     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 486889..497968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC616_RS02150 - 487943..488314 (+) 372 WP_227106510.1 diacylglycerol kinase -
  JC616_RS02155 - 488359..488739 (+) 381 WP_107797865.1 DUF1622 domain-containing protein -
  JC616_RS02160 topA 488830..491130 (-) 2301 WP_227106512.1 type I DNA topoisomerase -
  JC616_RS02165 - 491396..491854 (-) 459 WP_048413521.1 DUF494 family protein -
  JC616_RS02170 dprA 491889..492968 (-) 1080 WP_107797867.1 DNA-processing protein DprA Machinery gene
  JC616_RS02175 - 492965..493999 (-) 1035 WP_227106514.1 LysM peptidoglycan-binding domain-containing protein -
  JC616_RS02180 def 494149..494652 (+) 504 WP_107797869.1 peptide deformylase -
  JC616_RS02185 fmt 494690..495610 (+) 921 WP_227106516.1 methionyl-tRNA formyltransferase -
  JC616_RS02190 htpX 495646..496503 (+) 858 WP_227106518.1 zinc metalloprotease HtpX -
  JC616_RS02195 rsmB 496599..497849 (+) 1251 WP_227106520.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 37735.21 Da        Isoelectric Point: 6.2348

>NTDB_id=517630 JC616_RS02170 WP_107797867.1 491889..492968(-) (dprA) [Chromobacterium rhizoryzae strain 32279]
MKAPPHDWLLLALTPGIGPAGFLRLIDAFGGADAALNANSRQTEPLIGKEAAEALQRREAAASAEAALEWAQTPGCQLLS
LLDDDYPPQLAESNSPPPLLFARGRRELLTQPMLAIVGSRAATPQGRQNAESFSRELAEHGYCIVSGLASGIDAAAHHGA
LGQPPATVAVVGTGIDRVYPASNRQLAHRIAEEGLILSEFALGMGPLAGHFPRRNRIIAGLSRGCLVAEANIGSGSLITA
RLAMENNREVMAIPGSIHNPQSRGCHRLIKDGAKLVETVDDVLDEVGRLQRKRPSAKPAAPAAESPLLEAMGFDPISMDA
LSTTLGLTVGELYAMLLELELAGLVASHPGGLFQRLKPG

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=517630 JC616_RS02170 WP_107797867.1 491889..492968(-) (dprA) [Chromobacterium rhizoryzae strain 32279]
ATGAAGGCTCCGCCGCATGACTGGCTGTTGCTGGCGCTGACCCCCGGCATCGGTCCAGCCGGCTTTTTACGGCTGATCGA
CGCCTTCGGCGGCGCCGACGCCGCCTTGAACGCCAACAGCCGCCAGACCGAGCCCTTGATCGGCAAAGAAGCGGCCGAAG
CCTTGCAGCGGCGCGAGGCCGCCGCCTCCGCCGAGGCGGCGCTGGAATGGGCGCAAACGCCGGGCTGCCAATTGCTGTCG
CTGCTGGACGACGACTACCCGCCGCAGCTGGCCGAATCCAACTCGCCGCCGCCGCTGCTGTTCGCCCGCGGCCGGCGCGA
GCTGCTGACCCAGCCCATGCTCGCCATCGTGGGCAGCCGCGCCGCCACCCCGCAGGGCAGGCAGAACGCGGAAAGCTTTT
CCCGCGAACTGGCCGAACACGGCTATTGCATCGTCAGCGGCCTGGCCAGCGGCATCGACGCCGCCGCCCACCACGGCGCG
CTCGGACAGCCGCCCGCCACCGTCGCCGTGGTCGGCACCGGCATAGACCGCGTCTACCCGGCCAGCAACCGCCAGCTGGC
GCACCGCATCGCCGAGGAAGGCCTGATCCTGTCCGAGTTCGCGCTGGGCATGGGACCGCTGGCCGGCCATTTCCCGCGCC
GCAACCGCATCATCGCCGGCCTCAGCCGCGGCTGTCTGGTGGCGGAGGCCAATATCGGCTCCGGCTCGCTGATCACCGCG
CGGCTGGCGATGGAGAACAACCGCGAAGTGATGGCCATCCCCGGCTCCATCCACAATCCGCAGTCTCGCGGCTGTCACCG
GCTGATCAAGGACGGCGCCAAACTGGTGGAAACCGTGGACGACGTGCTGGACGAAGTGGGCAGGCTGCAACGCAAACGCC
CCAGCGCCAAGCCGGCGGCCCCCGCGGCGGAATCGCCGCTGCTTGAAGCCATGGGATTCGACCCCATCAGTATGGATGCG
CTTTCGACCACGCTCGGGTTGACTGTGGGGGAGCTTTACGCGATGCTGCTCGAACTTGAGCTGGCCGGCCTGGTGGCCAG
CCATCCCGGCGGGCTTTTTCAGCGCCTGAAACCGGGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(292-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T5NDK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

50

100

0.538
  dprA Neisseria gonorrhoeae strain FA1090

50

100

0.538
  dprA Neisseria meningitidis strain C311

49.485

100

0.535
  dprA Neisseria meningitidis MC58

49.485

100

0.535
  dprA Vibrio campbellii strain DS40M4

40.39

100

0.404
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.452

100

0.401
  dprA Legionella pneumophila strain ERS1305867

49.655

80.78

0.401
  dprA Acinetobacter baylyi ADP1

38.592

98.886

0.382
  dprA Glaesserella parasuis strain SC1401

44.194

86.351

0.382
  dprA Vibrio cholerae strain A1552

42.947

88.858

0.382
  dprA Acinetobacter baumannii D1279779

37.288

98.607

0.368
  dprA Acinetobacter baumannii strain A118

37.006

98.607

0.365