Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JC624_RS17670 Genome accession   NZ_CP066124
Coordinates   3683025..3684251 (+) Length   408 a.a.
NCBI ID   WP_005079343.1    Uniprot ID   A0A009R5F8
Organism   Acinetobacter pittii strain 32292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678025..3689251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS17635 rimP 3678696..3679220 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  JC624_RS17655 secG 3679858..3680187 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  JC624_RS17660 tpiA 3680200..3680994 (-) 795 WP_068565290.1 triose-phosphate isomerase -
  JC624_RS17665 pilB 3681286..3682998 (+) 1713 WP_068565291.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JC624_RS17670 pilC 3683025..3684251 (+) 1227 WP_005079343.1 type II secretion system F family protein Machinery gene
  JC624_RS19500 pilD 3684251..3685111 (+) 861 WP_267461696.1 prepilin peptidase Machinery gene
  JC624_RS17685 coaE 3685113..3685709 (+) 597 WP_068565303.1 dephospho-CoA kinase -
  JC624_RS17690 - 3685706..3686620 (-) 915 WP_068565305.1 DMT family transporter -
  JC624_RS17695 rlmB 3686656..3687405 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JC624_RS17700 - 3687508..3687834 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  JC624_RS17705 - 3687911..3689221 (-) 1311 WP_227062251.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45027.45 Da        Isoelectric Point: 9.8207

>NTDB_id=517592 JC624_RS17670 WP_005079343.1 3683025..3684251(+) (pilC) [Acinetobacter pittii strain 32292]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=517592 JC624_RS17670 WP_005079343.1 3683025..3684251(+) (pilC) [Acinetobacter pittii strain 32292]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCAGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCGCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTAGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTCACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCTACCACGTTTGCCGCTGGTGTTCCACTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAACGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009R5F8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365