Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JC624_RS19500 Genome accession   NZ_CP066124
Coordinates   3684251..3685111 (+) Length   286 a.a.
NCBI ID   WP_267461696.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 32292     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3679251..3690111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC624_RS17655 secG 3679858..3680187 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  JC624_RS17660 tpiA 3680200..3680994 (-) 795 WP_068565290.1 triose-phosphate isomerase -
  JC624_RS17665 pilB 3681286..3682998 (+) 1713 WP_068565291.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JC624_RS17670 pilC 3683025..3684251 (+) 1227 WP_005079343.1 type II secretion system F family protein Machinery gene
  JC624_RS19500 pilD 3684251..3685111 (+) 861 WP_267461696.1 prepilin peptidase Machinery gene
  JC624_RS17685 coaE 3685113..3685709 (+) 597 WP_068565303.1 dephospho-CoA kinase -
  JC624_RS17690 - 3685706..3686620 (-) 915 WP_068565305.1 DMT family transporter -
  JC624_RS17695 rlmB 3686656..3687405 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JC624_RS17700 - 3687508..3687834 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  JC624_RS17705 - 3687911..3689221 (-) 1311 WP_227062251.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32185.68 Da        Isoelectric Point: 6.6680

>NTDB_id=517602 JC624_RS19500 WP_267461696.1 3684251..3685111(+) (pilD) [Acinetobacter pittii strain 32292]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTSPNSAIWGYLIGFLCLWIVYYLFKVITDKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIVGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=517602 JC624_RS19500 WP_267461696.1 3684251..3685111(+) (pilD) [Acinetobacter pittii strain 32292]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCTATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTCGTGGTTATGGTGTTTGGCCCAACCCTACAAA
TGCTTTGGGGACTAGTTCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAGTATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGACAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCTTTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTGTTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

95.455

100

0.955
  pilD Acinetobacter nosocomialis M2

95.105

100

0.951
  pilD Vibrio cholerae strain A1552

53.846

95.455

0.514
  pilD Vibrio campbellii strain DS40M4

52.941

95.105

0.503
  pilD Neisseria gonorrhoeae MS11

47.328

91.608

0.434