Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I9190_RS01925 Genome accession   NZ_CP066121
Coordinates   419968..421200 (-) Length   410 a.a.
NCBI ID   WP_151780911.1    Uniprot ID   A0A8I1AE12
Organism   Acinetobacter bereziniae strain GD0320     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414968..426200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS01900 (I9190_01900) - 416232..416555 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  I9190_RS01905 (I9190_01905) rlmB 416699..417451 (+) 753 WP_151780914.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I9190_RS01910 (I9190_01910) - 417492..418412 (+) 921 WP_151780913.1 DMT family transporter -
  I9190_RS01915 (I9190_01915) coaE 418459..419058 (-) 600 WP_151780912.1 dephospho-CoA kinase -
  I9190_RS01920 (I9190_01920) pilD 419084..419965 (-) 882 WP_171496493.1 prepilin peptidase Machinery gene
  I9190_RS01925 (I9190_01925) pilC 419968..421200 (-) 1233 WP_151780911.1 type II secretion system F family protein Machinery gene
  I9190_RS01930 (I9190_01930) pilB 421228..422940 (-) 1713 WP_035300190.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I9190_RS01935 (I9190_01935) tpiA 423219..424013 (+) 795 WP_151780909.1 triose-phosphate isomerase -
  I9190_RS01940 (I9190_01940) secG 424023..424364 (+) 342 WP_004826367.1 preprotein translocase subunit SecG -
  I9190_RS01965 (I9190_01965) rimP 425158..425682 (+) 525 WP_004826368.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45144.58 Da        Isoelectric Point: 9.9245

>NTDB_id=517508 I9190_RS01925 WP_151780911.1 419968..421200(-) (pilC) [Acinetobacter bereziniae strain GD0320]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPARNMALAKVTLRKQGITIKTIREKKKNIFEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKSEVEGGNTFAGALRKYPRYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPISVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQIVVNMSNWMQKYWFVFLLIVGIIIA
TFLEAKKRSKKFQDFLDRTALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIREDVA
TGQQLNFAMRVSNKFPAMAVQMVAIGEESGALDAMLDKVASHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSIVGG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=517508 I9190_RS01925 WP_151780911.1 419968..421200(-) (pilC) [Acinetobacter bereziniae strain GD0320]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACCTTTGCTTATGACGGGGTTGATCGTAAAGGAATCAAGGTCAAAGGAGA
ATTGCCTGCACGGAATATGGCACTCGCTAAAGTCACGTTGAGAAAGCAAGGCATTACCATTAAAACCATTCGAGAAAAAA
AGAAAAATATCTTTGAAGGTTTAATGAAAAAAGGAATATCAACTTTAGATATTACCATTTTTACCCGTCAGCTTGCCACT
ATGATGAAAGCTGGTGTGCCTTTGGTACAAAGTTTTGAAATTGTTGCCGAAGGTTTAGAAAACCCTTCTATGCGAGAAGT
TGTTTTAGGAATCAAAAGTGAAGTTGAAGGCGGAAATACCTTTGCAGGCGCATTGAGAAAATATCCCCGCTACTTTGATA
ACTTGTTTTGTTCCTTGGTGGAGTCAGGAGAGCAATCAGGTGCTTTAGAGACCATGCTGGATCGTGTTGCGATCTATAAA
GAAAAAAGTGAGCTGTTAAAACAAAAAATTAAAAAAGCCATGAAATATCCAATCTCAGTGATTGTCGTTGCCGTCATTGT
GACGATTATTCTCATGGTCAAGGTTGTTCCTGTGTTTCAAGACCTCTTTAGCTCCTTTGGTGCAGATCTTCCTGCATTTA
CTCAAATTGTGGTGAATATGTCTAACTGGATGCAGAAGTATTGGTTTGTCTTTTTACTGATTGTTGGCATCATTATTGCC
ACATTTTTAGAAGCAAAAAAACGGAGTAAGAAATTCCAAGACTTTTTGGATCGCACTGCACTCAAACTGCCTATTTTTGG
TGATCTAGTCTATAAAGCCATTATTGCCCGTTATAGCCGTACCTTAGCCACCACTTTTGCGGCAGGGGTACCCCTCATCG
AAGCACTTGAGTCCACCGCTGGGGCAACTAACAATGTGGTCTATGAACAGGCTGTGATGAAAATTCGTGAAGATGTTGCC
ACAGGTCAACAACTGAATTTTGCCATGCGTGTCAGTAATAAATTTCCTGCTATGGCAGTGCAAATGGTGGCGATTGGAGA
AGAATCTGGTGCATTGGATGCAATGTTGGATAAAGTCGCCTCACATTTTGAAAATGAAGTTGATAATGCAGTTGATGGTT
TAACCTCTATGATGGAACCTCTGATTATGGCTATCTTAGGCGTCTTGGTTGGTGGTCTCGTGATTGCCATGTATCTTCCA
ATCTTCCAAATGGGTTCAATTGTTGGTGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

86.275

99.512

0.859
  pilC Acinetobacter baylyi ADP1

84.314

99.512

0.839
  pilC Pseudomonas stutzeri DSM 10701

60.442

99.268

0.6
  pilC Legionella pneumophila strain ERS1305867

53.58

98.78

0.529
  pilG Neisseria meningitidis 44/76-A

46.231

97.073

0.449
  pilG Neisseria gonorrhoeae MS11

46.231

97.073

0.449
  pilC Vibrio campbellii strain DS40M4

40.976

100

0.41
  pilC Vibrio cholerae strain A1552

41.176

99.512

0.41
  pilC Thermus thermophilus HB27

36.408

100

0.366