Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   I9190_RS01920 Genome accession   NZ_CP066121
Coordinates   419084..419965 (-) Length   293 a.a.
NCBI ID   WP_171496493.1    Uniprot ID   A0A8I1AJY8
Organism   Acinetobacter bereziniae strain GD0320     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414084..424965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9190_RS01900 (I9190_01900) - 416232..416555 (+) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -
  I9190_RS01905 (I9190_01905) rlmB 416699..417451 (+) 753 WP_151780914.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I9190_RS01910 (I9190_01910) - 417492..418412 (+) 921 WP_151780913.1 DMT family transporter -
  I9190_RS01915 (I9190_01915) coaE 418459..419058 (-) 600 WP_151780912.1 dephospho-CoA kinase -
  I9190_RS01920 (I9190_01920) pilD 419084..419965 (-) 882 WP_171496493.1 prepilin peptidase Machinery gene
  I9190_RS01925 (I9190_01925) pilC 419968..421200 (-) 1233 WP_151780911.1 type II secretion system F family protein Machinery gene
  I9190_RS01930 (I9190_01930) pilB 421228..422940 (-) 1713 WP_035300190.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I9190_RS01935 (I9190_01935) tpiA 423219..424013 (+) 795 WP_151780909.1 triose-phosphate isomerase -
  I9190_RS01940 (I9190_01940) secG 424023..424364 (+) 342 WP_004826367.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32752.15 Da        Isoelectric Point: 7.4275

>NTDB_id=517507 I9190_RS01920 WP_171496493.1 419084..419965(-) (pilD) [Acinetobacter bereziniae strain GD0320]
MNMFHDFLNLLIQSSTALYIVVGLVSLCVGSFLNVVIYRTPKMMEKEWRQEWQAECQLLAGSQQIVIDEEKLSLSQPAST
CPQCKTPIRWYQNIPVISWLALRGKCASCQNPISIRYPLVELLTAICSLTVVAVYGPTLQMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAVGLGVNSFEIYTTANAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENIPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=517507 I9190_RS01920 WP_171496493.1 419084..419965(-) (pilD) [Acinetobacter bereziniae strain GD0320]
ATGAATATGTTTCACGATTTTTTAAACCTTCTGATTCAATCATCGACTGCGCTCTATATTGTTGTCGGTCTAGTCAGTCT
ATGTGTCGGTAGTTTTCTTAATGTGGTGATTTATCGCACACCAAAGATGATGGAAAAGGAATGGCGGCAAGAGTGGCAAG
CAGAATGCCAATTGCTTGCTGGTTCTCAACAGATCGTTATTGATGAAGAAAAGTTGAGTCTGAGTCAACCTGCATCCACC
TGTCCACAATGCAAAACACCGATTCGCTGGTATCAAAATATACCCGTGATCAGTTGGTTGGCGTTACGTGGTAAATGTGC
TTCATGTCAGAATCCCATCAGTATTCGCTATCCTTTAGTGGAACTACTGACAGCAATCTGCTCCTTAACCGTTGTTGCAG
TATATGGACCAACACTGCAAATGGTGTTTGGTGTATTGCTGACATGGGTGCTGATTACTCTGACCTTTATTGATTTTGAT
ACACAATTATTACCTGATCGTTTTACCCTAACACTTGCAGCTGTGGGTTTAGGAGTTAATTCATTTGAAATATATACCAC
GGCAAACGCTGCAATTTGGGGTTATATTATTGGGTTTCTTTGCCTGTGGATTGTCTATTACCTGTTTAAAATCGTGACAG
GTAAGGAAGGCATGGGTTATGGTGACTTTAAGCTTCTTGCTGCATTGGGTGCTTGGATGGGACCGTTGATGCTGCCTTTA
ATTATCCTACTTTCTTCGGTTGTCGGGGCAATCATTGGCATCATCCTGCTAAAAATTCGTAAGGAAAATATTCCTTTTGC
TTTTGGACCTTATATCGCCATTGCAGGTTGGATTGCATTCTTATGGGGCGAACAAATCATGAAGATTTACTTAGGTCAAT
AA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-133)

Type IV leader peptidase family (Peptidase_A24)

(146-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

76.042

98.294

0.747
  pilD Acinetobacter nosocomialis M2

76.042

98.294

0.747
  pilD Vibrio campbellii strain DS40M4

54.317

94.881

0.515
  pilD Vibrio cholerae strain A1552

53.623

94.198

0.505
  pilD Neisseria gonorrhoeae MS11

44.61

91.809

0.41