Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6H74_RS00850 Genome accession   NZ_CP066069
Coordinates   174089..174484 (-) Length   131 a.a.
NCBI ID   WP_012766456.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1017     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 174631..175979 174089..174484 flank 147


Gene organization within MGE regions


Location: 174089..175979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H74_RS00850 (I6H74_00850) ssbA 174089..174484 (-) 396 WP_012766456.1 single-stranded DNA-binding protein Machinery gene
  I6H74_RS00855 (I6H74_00855) - 174631..175979 (+) 1349 WP_115256712.1 IS3 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14816.01 Da        Isoelectric Point: 8.0157

>NTDB_id=517074 I6H74_RS00850 WP_012766456.1 174089..174484(-) (ssbA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
MYNKVIVIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=517074 I6H74_RS00850 WP_012766456.1 174089..174484(-) (ssbA) [Streptococcus dysgalactiae strain FDAARGOS_1017]
ATGTATAATAAAGTGATAGTAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAATTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397