Detailed information NTG0517003

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: I6I28_RS00330
• Genome accession: NZ_CP066062
• Coordinates: 62556..62873 (-)
• Length: 105 a.a.
• NCBI ID: WP_002472491.1
• Uniprot ID: A0A1E9ACN7
• Organism: Staphylococcus pettenkoferi strain FDAARGOS_1071
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 57556..67873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I28_RS00300 (I6I28_00300)	gcvPA	58118..59470 (-)	1353	WP_002472479.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-
I6I28_RS00305 (I6I28_00305)	gcvT	59487..60578 (-)	1092	WP_002472490.1	glycine cleavage system aminomethyltransferase GcvT	-
I6I28_RS00310 (I6I28_00310)	-	60757..61230 (-)	474	WP_049405250.1	shikimate kinase	-
I6I28_RS00315 (I6I28_00315)	-	61437..61826 (-)	390	WP_169931256.1	ComGF family competence protein	-
I6I28_RS00320 (I6I28_00320)	-	61852..62139 (-)	288	WP_088606290.1	hypothetical protein	-
I6I28_RS00325 (I6I28_00325)	comGD	62126..62578 (-)	453	WP_198465111.1	competence type IV pilus minor pilin ComGD	-
I6I28_RS00330 (I6I28_00330)	comGC	62556..62873 (-)	318	WP_002472491.1	competence type IV pilus major pilin ComGC	Machinery gene
I6I28_RS00335 (I6I28_00335)	comGB	62887..63954 (-)	1068	WP_049405252.1	competence type IV pilus assembly protein ComGB	-
I6I28_RS00340 (I6I28_00340)	comGA	63926..64900 (-)	975	WP_049405253.1	competence type IV pilus ATPase ComGA	Machinery gene
I6I28_RS00345 (I6I28_00345)	-	64967..65593 (-)	627	WP_049405255.1	MBL fold metallo-hydrolase	-
I6I28_RS00350 (I6I28_00350)	-	65593..65919 (-)	327	WP_002472477.1	MTH1187 family thiamine-binding protein	-
I6I28_RS00355 (I6I28_00355)	-	65919..66905 (-)	987	WP_049405257.1	ROK family glucokinase	-
I6I28_RS00360 (I6I28_00360)	-	66910..67104 (-)	195	WP_049405258.1	YqgQ family protein	-

Sequence

Protein

• Length: 105 a.a.
• Molecular weight: 11888.03 Da
• Isoelectric Point: 9.8008

>NTDB_id=517003 I6I28_RS00330 WP_002472491.1 62556..62873(-) (comGC) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
MKKLHKRYLKSAFTLIEMLLVLLIISLLLILIIPNIAKQSQHIQTTGCDAQVKMVNSQIEAYTLKNDHKPDSIDDLIREG
YIKEQQKKCKNGQAIAIQNGEARAS

Nucleotide

• Length: 318 bp

>NTDB_id=517003 I6I28_RS00330 WP_002472491.1 62556..62873(-) (comGC) [Staphylococcus pettenkoferi strain FDAARGOS_1071]
ATGAAGAAACTACACAAACGTTATTTAAAATCGGCTTTTACACTTATAGAAATGTTACTCGTACTCCTCATTATCAGCTT
ACTCTTAATATTAATCATCCCGAATATAGCGAAACAGTCTCAACACATTCAAACGACAGGGTGTGATGCACAAGTTAAGA
TGGTTAATAGTCAGATTGAGGCTTATACACTTAAAAACGACCATAAACCTGACTCCATCGACGACTTAATTAGAGAAGGC
TATATCAAAGAACAACAGAAGAAATGTAAAAATGGCCAAGCGATAGCAATTCAAAATGGAGAAGCGCGTGCATCTTAA

Domains

No domain identified.

3D structure

• AlphaFold DB: A0A1E9ACN7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus N315	72.277	96.19	0.695
comGC	Staphylococcus aureus MW2	72.277	96.19	0.695
comYC	Streptococcus suis isolate S10	50	83.81	0.419
comYC	Streptococcus mutans UA159	48.837	81.905	0.4
comYC	Streptococcus mutans UA140	48.837	81.905	0.4
comGC	Bacillus subtilis subsp. subtilis str. 168	44.565	87.619	0.39
comYC	Streptococcus gordonii str. Challis substr. CH1	47.674	81.905	0.39
comGC/cglC	Streptococcus mitis SK321	49.383	77.143	0.381
comGC/cglC	Streptococcus pneumoniae D39	44.944	84.762	0.381
comGC/cglC	Streptococcus pneumoniae R6	44.944	84.762	0.381
comGC/cglC	Streptococcus pneumoniae TIGR4	44.944	84.762	0.381
comGC/cglC	Streptococcus pneumoniae Rx1	44.944	84.762	0.381
comGC	Lactococcus lactis subsp. cremoris KW2	43.182	83.81	0.362