Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6H78_RS08425 Genome accession   NZ_CP066059
Coordinates   1717437..1717907 (+) Length   156 a.a.
NCBI ID   WP_198459392.1    Uniprot ID   A0A7T4ISB6
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1712437..1722907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS08400 (I6H78_08400) - 1712508..1712984 (+) 477 WP_084849166.1 DUF5590 domain-containing protein -
  I6H78_RS08405 (I6H78_08405) - 1712994..1714172 (+) 1179 WP_198459390.1 pyridoxal phosphate-dependent aminotransferase -
  I6H78_RS08410 (I6H78_08410) asnS 1714325..1715668 (+) 1344 WP_416069078.1 asparagine--tRNA ligase -
  I6H78_RS08415 (I6H78_08415) - 1715794..1716999 (+) 1206 WP_198459391.1 MFS transporter -
  I6H78_RS08420 (I6H78_08420) rpsF 1717135..1717425 (+) 291 WP_001151782.1 30S ribosomal protein S6 -
  I6H78_RS08425 (I6H78_08425) ssbA 1717437..1717907 (+) 471 WP_198459392.1 single-stranded DNA-binding protein SsbA Machinery gene
  I6H78_RS08430 (I6H78_08430) rpsR 1717939..1718178 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  I6H78_RS08435 (I6H78_08435) - 1718361..1718870 (+) 510 WP_198459393.1 GNAT family N-acetyltransferase -
  I6H78_RS08440 (I6H78_08440) wecB 1719308..1720456 (+) 1149 WP_198459394.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  I6H78_RS08445 (I6H78_08445) - 1720463..1721242 (+) 780 WP_198459395.1 hypothetical protein -
  I6H78_RS08450 (I6H78_08450) - 1721385..1722695 (+) 1311 WP_198459396.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17194.18 Da        Isoelectric Point: 5.8816

>NTDB_id=516994 I6H78_RS08425 WP_198459392.1 1717437..1717907(+) (ssbA) [Streptococcus oralis strain FDAARGOS_1021]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGVREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRGVREGHTGGAYSAPTAGQSAPANPVPDFSRSENPFGVTNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=516994 I6H78_RS08425 WP_198459392.1 1717437..1717907(+) (ssbA) [Streptococcus oralis strain FDAARGOS_1021]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGTACGTGAGGCTGATTTCATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAGAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGCGG
AGTGCGTGAAGGACATACAGGTGGAGCTTATTCTGCACCAACTGCTGGTCAATCAGCACCTGCAAATCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGGAGTAACCAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T4ISB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

52.841

100

0.596
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.573

75

0.372
  ssb Neisseria gonorrhoeae MS11

33.143

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.211

69.872

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

67.949

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

48.718

75

0.365
  ssbB/cilA Streptococcus pneumoniae R6

48.718

75

0.365
  ssbB/cilA Streptococcus mitis SK321

48.718

75

0.365
  ssbB/cilA Streptococcus pneumoniae D39

48.718

75

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

48.718

75

0.365