Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   THIVI_RS15520 Genome accession   NC_018012
Coordinates   3506595..3507770 (+) Length   391 a.a.
NCBI ID   WP_014779490.1    Uniprot ID   I3YDK9
Organism   Thiocystis violascens DSM 198     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3501595..3512770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THIVI_RS15495 (Thivi_3195) - 3501725..3502312 (-) 588 WP_014779485.1 DUF4390 domain-containing protein -
  THIVI_RS15500 (Thivi_3196) rsmB 3502309..3503682 (-) 1374 WP_014779486.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  THIVI_RS15505 (Thivi_3197) fmt 3503648..3504589 (-) 942 WP_041447654.1 methionyl-tRNA formyltransferase -
  THIVI_RS15510 (Thivi_3198) def 3504714..3505250 (-) 537 WP_014779488.1 peptide deformylase -
  THIVI_RS15515 (Thivi_3199) - 3505379..3506587 (+) 1209 WP_014779489.1 LysM domain-containing protein -
  THIVI_RS15520 (Thivi_3200) dprA 3506595..3507770 (+) 1176 WP_014779490.1 DNA-processing protein DprA Machinery gene
  THIVI_RS15525 (Thivi_3201) - 3507907..3508383 (+) 477 WP_014779491.1 DUF494 domain-containing protein -
  THIVI_RS15530 (Thivi_3202) topA 3508719..3511022 (+) 2304 WP_014779492.1 type I DNA topoisomerase -
  THIVI_RS15535 (Thivi_3203) - 3511118..3512623 (-) 1506 WP_014779493.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 40335.20 Da        Isoelectric Point: 6.4148

>NTDB_id=51655 THIVI_RS15520 WP_014779490.1 3506595..3507770(+) (dprA) [Thiocystis violascens DSM 198]
MSPRSNPLDAPLDAWLALANAPGIGPRTVARLIEHFGSPVAVLRASPERLAAAGLKPASVAALKQPDPDALAAVLDWSAQ
PDAHILTLADPRYPPLLAEIHDAPPLLYVRGDAGLLAEPQIAIVGSRNPTPGGLETTREFARQLVGFGLIVTSGLALGVD
GAAHAAALAGGGRTVAVLGTGPDRVYPAVHRDLARRIADTGAGALVSEFPPGQGPLARNFPRRNRLISGLSLGVLVTEAA
LKSGSLITARTALEQGREVFAVPGSIRNPLARGCHALIRDGARLVESAQEILVELAPLLHCALAAPDSALAATAATAVDL
TEAEAAPDLSVSLDAESQRLLNSMGFDPVAPDELIERSGLPAQRVAAMLLVLELSGHVSSAPGGRYHRSRA

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=51655 THIVI_RS15520 WP_014779490.1 3506595..3507770(+) (dprA) [Thiocystis violascens DSM 198]
TTGAGTCCGCGCTCGAATCCGCTGGACGCGCCGCTCGACGCCTGGCTCGCCTTGGCCAATGCGCCAGGGATCGGTCCGCG
CACCGTCGCCAGACTGATCGAGCACTTCGGCAGTCCCGTCGCGGTTCTGCGCGCCTCCCCCGAACGGCTTGCCGCCGCGG
GCCTGAAGCCGGCAAGCGTGGCGGCCCTCAAGCAGCCGGATCCGGACGCTCTCGCGGCCGTGCTGGACTGGTCGGCTCAG
CCCGATGCCCATATCCTCACCCTTGCCGATCCCCGGTATCCCCCGCTGCTCGCCGAGATCCACGATGCGCCCCCGCTGCT
CTATGTGCGCGGCGATGCCGGTCTGCTCGCCGAACCCCAGATCGCCATCGTCGGCAGCCGCAATCCCACGCCGGGCGGAC
TTGAGACCACCCGGGAGTTCGCCCGGCAGTTGGTCGGTTTCGGATTGATCGTCACCAGCGGTCTGGCGCTTGGCGTCGAC
GGTGCCGCACATGCCGCCGCCCTGGCGGGAGGCGGGCGAACCGTCGCGGTGCTTGGGACCGGACCCGACCGCGTCTATCC
CGCGGTCCATCGGGATCTGGCCCGCCGGATCGCCGACACGGGCGCGGGCGCTCTGGTTAGCGAGTTTCCGCCGGGGCAGG
GGCCGCTGGCCCGAAATTTTCCACGTCGCAACCGACTCATCAGCGGATTGAGTCTGGGGGTGCTGGTCACGGAGGCGGCC
CTGAAAAGCGGATCCCTGATTACCGCCCGTACCGCGCTCGAACAGGGGCGCGAGGTGTTCGCCGTGCCGGGATCGATCCG
CAACCCGCTGGCGCGGGGCTGTCACGCGCTGATTCGCGATGGTGCCAGGCTGGTCGAATCCGCCCAGGAAATTCTGGTGG
AACTGGCGCCACTGCTGCATTGTGCGCTGGCGGCACCAGACTCGGCCCTCGCGGCGACCGCGGCCACTGCCGTGGATCTG
ACGGAGGCGGAAGCGGCGCCAGATCTGTCGGTATCCCTTGACGCGGAGTCGCAGCGGTTGCTGAATTCCATGGGGTTCGA
CCCGGTTGCCCCGGATGAATTGATCGAGCGCAGCGGGTTGCCTGCCCAGCGCGTTGCCGCCATGTTGTTGGTTCTCGAAT
TGAGCGGTCATGTATCATCGGCCCCTGGAGGACGCTATCACCGTTCTCGCGCCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(325-384)

DNA recombination-mediator protein A (DNA_processg_A)

(81-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3YDK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.223

100

0.486
  dprA Neisseria meningitidis strain C311

44.133

100

0.442
  dprA Neisseria meningitidis MC58

44.133

100

0.442
  dprA Vibrio cholerae strain A1552

45.17

97.954

0.442
  dprA Neisseria gonorrhoeae strain FA1090

43.702

99.488

0.435
  dprA Neisseria gonorrhoeae MS11

43.188

99.488

0.43
  dprA Legionella pneumophila strain ERS1305867

44.054

94.629

0.417
  dprA Glaesserella parasuis strain SC1401

43.396

94.885

0.412
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.895

97.442

0.389
  dprA Acinetobacter baylyi ADP1

39.73

94.629

0.376
  dprA Acinetobacter baumannii strain A118

38.71

95.141

0.368
  dprA Acinetobacter baumannii D1279779

38.275

94.885

0.363

Multiple sequence alignment