Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6H54_RS22980 Genome accession   NZ_CP066006
Coordinates   5020810..5022027 (+) Length   405 a.a.
NCBI ID   WP_034396921.1    Uniprot ID   -
Organism   Delftia acidovorans strain FDAARGOS_997     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5015810..5027027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H54_RS22955 (I6H54_22955) rpmA 5017044..5017301 (-) 258 WP_012207283.1 50S ribosomal protein L27 -
  I6H54_RS22960 (I6H54_22960) rplU 5017317..5017628 (-) 312 WP_012207284.1 50S ribosomal protein L21 -
  I6H54_RS22965 (I6H54_22965) - 5017859..5018788 (+) 930 WP_034396917.1 polyprenyl synthetase family protein -
  I6H54_RS22975 (I6H54_22975) pilB 5019029..5020771 (+) 1743 WP_034396919.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6H54_RS22980 (I6H54_22980) pilC 5020810..5022027 (+) 1218 WP_034396921.1 type II secretion system F family protein Machinery gene
  I6H54_RS22985 (I6H54_22985) pilD 5022027..5022914 (+) 888 WP_034396923.1 prepilin peptidase Machinery gene
  I6H54_RS22990 (I6H54_22990) coaE 5022929..5023573 (+) 645 WP_034396924.1 dephospho-CoA kinase -
  I6H54_RS22995 (I6H54_22995) zapD 5023663..5024418 (+) 756 WP_034396925.1 cell division protein ZapD -
  I6H54_RS23000 (I6H54_23000) - 5024418..5024684 (+) 267 WP_034398936.1 DNA gyrase inhibitor YacG -
  I6H54_RS23005 (I6H54_23005) - 5024695..5025213 (-) 519 WP_034396927.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  I6H54_RS23010 (I6H54_23010) - 5025264..5026220 (-) 957 WP_012207293.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44456.27 Da        Isoelectric Point: 9.3922

>NTDB_id=516276 I6H54_RS22980 WP_034396921.1 5020810..5022027(+) (pilC) [Delftia acidovorans strain FDAARGOS_997]
MATAASKGIKEFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRSDVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFSSFGADLPAPTLFVMGISDIFVQWWWVIFGVIGGGFYFFM
QAWKRNERMQQFMDRAMLKIPVFGALIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=516276 I6H54_RS22980 WP_034396921.1 5020810..5022027(+) (pilC) [Delftia acidovorans strain FDAARGOS_997]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGAATTTGTCTTCGAGTGGGAAGGCAAGGATCGCAACGGCAAGATCATTCG
AGGCGAAACCCGGGCCGGAGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTTCCCAGCAAGATCAAGA
AGCGCCGTACGCGCGGCGGCAAGAGGATCAAACCCAAGGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCTGGTGTCCCGCTGCTGCAGGCCTTCGACATCGTCGGGCGCGGCAACACCAACCCCAGTGTCACGCGCCTGCTGGCCGA
TATCCGCTCCGACGTGGAGACGGGCACCTCGCTGAATGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCCGGGGAAGCGGCCGGTATCCTGGAGGCCCTGCTCGATCGGCTGGCCACCTATATGGAAAAAACC
GAGGCCATCAAGTCCAAGATCAAGTCCGCCTTGATGTATCCGATCTCGGTGATCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATCTTCGTGATTCCCGCCTTCAAGGAAGTGTTCAGCTCCTTCGGCGCGGATCTGCCGGCACCGACGCTGTTCG
TCATGGGCATCAGCGACATCTTTGTCCAATGGTGGTGGGTGATCTTCGGCGTGATCGGAGGCGGCTTCTACTTCTTCATG
CAGGCTTGGAAGCGCAACGAGCGCATGCAGCAGTTCATGGATCGTGCAATGCTGAAGATACCGGTCTTTGGCGCATTGAT
CGAAAAGTCCTGCGTTGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCTGCAGGCGTTCCGCTGGTCGAGGCACTGG
ATTCCGTCGGCGGCGCCTCCGGGAATGCCGTCTACGCCAATGCCACCGAGAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGCCTCACGGTAGCCATGACCAATGCCAACGTCTTTCCCTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTTGGCAAGGCGGCCGATTTCTACGAGGAAGAGGTCGATGACATGGTGGCTGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.446

99.753

0.553
  pilG Neisseria gonorrhoeae MS11

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.251

98.272

0.494
  pilG Neisseria meningitidis 44/76-A

49.75

98.765

0.491
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.05

98.025

0.393
  pilC Vibrio campbellii strain DS40M4

39

98.765

0.385
  pilC Thermus thermophilus HB27

36.842

98.519

0.363