Detailed information NTG0516277

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6H54_RS22985
• Genome accession: NZ_CP066006
• Coordinates: 5022027..5022914 (+)
• Length: 295 a.a.
• NCBI ID: WP_034396923.1
• Uniprot ID: -
• Organism: Delftia acidovorans strain FDAARGOS_997
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5017027..5027914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6H54_RS22955 (I6H54_22955)	rpmA	5017044..5017301 (-)	258	WP_012207283.1	50S ribosomal protein L27	-
I6H54_RS22960 (I6H54_22960)	rplU	5017317..5017628 (-)	312	WP_012207284.1	50S ribosomal protein L21	-
I6H54_RS22965 (I6H54_22965)	-	5017859..5018788 (+)	930	WP_034396917.1	polyprenyl synthetase family protein	-
I6H54_RS22975 (I6H54_22975)	pilB	5019029..5020771 (+)	1743	WP_034396919.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6H54_RS22980 (I6H54_22980)	pilC	5020810..5022027 (+)	1218	WP_034396921.1	type II secretion system F family protein	Machinery gene
I6H54_RS22985 (I6H54_22985)	pilD	5022027..5022914 (+)	888	WP_034396923.1	prepilin peptidase	Machinery gene
I6H54_RS22990 (I6H54_22990)	coaE	5022929..5023573 (+)	645	WP_034396924.1	dephospho-CoA kinase	-
I6H54_RS22995 (I6H54_22995)	zapD	5023663..5024418 (+)	756	WP_034396925.1	cell division protein ZapD	-
I6H54_RS23000 (I6H54_23000)	-	5024418..5024684 (+)	267	WP_034398936.1	DNA gyrase inhibitor YacG	-
I6H54_RS23005 (I6H54_23005)	-	5024695..5025213 (-)	519	WP_034396927.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
I6H54_RS23010 (I6H54_23010)	-	5025264..5026220 (-)	957	WP_012207293.1	ATP-binding protein	-
I6H54_RS23015 (I6H54_23015)	argJ	5026386..5027618 (-)	1233	WP_013800814.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 31732.32 Da
• Isoelectric Point: 6.6134

>NTDB_id=516277 I6H54_RS22985 WP_034396923.1 5022027..5022914(+) (pilD) [Delftia acidovorans strain FDAARGOS_997]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSGAAPPSAAATDPAEAPLSLSRPRSRCPHCG
HAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCTMQWGITPTGAIWCLFSAALLSLALIDWDTTLLP
DDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILI
SSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAAIGL

Nucleotide

• Length: 888 bp

>NTDB_id=516277 I6H54_RS22985 WP_034396923.1 5022027..5022914(+) (pilD) [Delftia acidovorans strain FDAARGOS_997]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAGGAGCAATCCGGCGCCGCAC
CTCCATCTGCTGCCGCGACTGACCCTGCCGAGGCTCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCATTGCGGC
CATGCCATCCACTGGTACGAGAACATTCCCGTGCTCAGCTATCTGGCGCTGCGGGGCCGGTGCTCCGAATGCAAGGCATC
GATCAGCATCCGCTATCCGCTGGTGGAACTGGCCTGCGCTGCGCTATTCGCCTACTGCACGATGCAATGGGGCATCACGC
CCACGGGCGCCATCTGGTGCCTGTTCAGCGCCGCCTTGCTGAGCCTGGCATTGATCGACTGGGATACCACACTGCTCCCC
GACGACATCACCCTGCCCTTGCTGTGGGCCGGGCTGCTTTCATCGGCACTGCACTGGACCGCCGTGCCTCTGGCCGACGC
GGTCTGGGGTGCCGCAGCGGGCTATCTTTCGCTGTGGCTGGTCTACTGGGCCTTCAAGCTCGCCACCGGCAAGGAAGGTA
TGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGGGCCTGGTTCGGCTGGCAGGCTCTTGTGCCCATCATCCTGATC
TCGTCCGTGATTGGCGCCATCGTGGGCATTGCGCTGAAGATCAACAGCCGACTGCGCGAAGGTGGCTATGTTCCCTTCGG
CCCCTTTCTTGCGGGCGCCGGCTTTGCCGCCATGGTGTTCGGACCCCAGCAGATGCTGCAATCCCTGTTGGCGGCCATCG
GTCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-250)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.246	95.254	0.488
pilD	Vibrio campbellii strain DS40M4	46.953	94.576	0.444
pilD	Neisseria gonorrhoeae MS11	47.191	90.508	0.427
pilD	Acinetobacter nosocomialis M2	45.421	92.542	0.42
pilD	Acinetobacter baumannii D1279779	45.055	92.542	0.417