Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6I29_RS07410 Genome accession   NZ_CP065998
Coordinates   1458825..1459238 (-) Length   137 a.a.
NCBI ID   WP_099989995.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain FDAARGOS_1072     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1453825..1464238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I29_RS07380 (I6I29_07380) - 1454111..1454431 (-) 321 WP_081378304.1 hypothetical protein -
  I6I29_RS07385 (I6I29_07385) - 1454494..1454661 (-) 168 WP_242063099.1 hypothetical protein -
  I6I29_RS14055 - 1455134..1455511 (-) 378 WP_242063101.1 DnaB-like helicase C-terminal domain-containing protein -
  I6I29_RS14060 - 1455471..1455851 (-) 381 WP_277922885.1 DnaB-like helicase C-terminal domain-containing protein -
  I6I29_RS14240 - 1455863..1456012 (-) 150 WP_277922886.1 DnaB-like helicase C-terminal domain-containing protein -
  I6I29_RS14065 - 1456063..1456419 (-) 357 WP_242063102.1 hypothetical protein -
  I6I29_RS07395 (I6I29_07395) - 1456874..1457600 (-) 727 Protein_1431 DnaD domain protein -
  I6I29_RS07400 (I6I29_07400) - 1457593..1458263 (-) 671 Protein_1432 putative HNHc nuclease -
  I6I29_RS07405 (I6I29_07405) - 1458264..1458812 (-) 549 WP_242063103.1 NUMOD4 motif-containing HNH endonuclease -
  I6I29_RS07410 (I6I29_07410) ssbA 1458825..1459238 (-) 414 WP_099989995.1 single-stranded DNA-binding protein Machinery gene
  I6I29_RS07415 (I6I29_07415) - 1459238..1459909 (-) 672 WP_031253729.1 ERF family protein -
  I6I29_RS07420 (I6I29_07420) - 1459906..1460391 (-) 486 WP_020219718.1 siphovirus Gp157 family protein -
  I6I29_RS07425 (I6I29_07425) - 1460434..1460637 (-) 204 WP_242063104.1 hypothetical protein -
  I6I29_RS07430 (I6I29_07430) - 1460649..1460909 (-) 261 WP_099989994.1 DUF1108 family protein -
  I6I29_RS07435 (I6I29_07435) - 1460991..1461167 (-) 177 WP_180291869.1 hypothetical protein -
  I6I29_RS07440 (I6I29_07440) - 1461155..1461379 (-) 225 WP_015728800.1 hypothetical protein -
  I6I29_RS07445 (I6I29_07445) - 1461376..1462119 (-) 744 WP_099989993.1 BRO family protein -
  I6I29_RS07450 (I6I29_07450) - 1462197..1462424 (+) 228 WP_060830240.1 hypothetical protein -
  I6I29_RS07455 (I6I29_07455) - 1462421..1462588 (-) 168 WP_015728797.1 hypothetical protein -
  I6I29_RS14070 - 1462694..1462921 (-) 228 WP_242063113.1 hypothetical protein -
  I6I29_RS07460 (I6I29_07460) - 1462944..1463207 (+) 264 WP_037543667.1 CRISPR-associated endonuclease Cas2 -
  I6I29_RS07465 (I6I29_07465) - 1463211..1463372 (-) 162 WP_037543668.1 hypothetical protein -
  I6I29_RS07470 (I6I29_07470) - 1463386..1463651 (-) 266 Protein_1447 helix-turn-helix transcriptional regulator -
  I6I29_RS07475 (I6I29_07475) - 1463670..1463822 (-) 153 Protein_1448 transcriptional regulator -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15584.18 Da        Isoelectric Point: 6.3425

>NTDB_id=516220 I6I29_RS07410 WP_099989995.1 1458825..1459238(-) (ssbA) [Staphylococcus pseudintermedius strain FDAARGOS_1072]
MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVVCDSVQFLEPKSNGQSNSQAKQQQRQDNPFDNSDFDDSSLPF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=516220 I6I29_RS07410 WP_099989995.1 1458825..1459238(-) (ssbA) [Staphylococcus pseudintermedius strain FDAARGOS_1072]
ATGCTCAACAGAGTCGTATTGGTAGGTCGATTAACAAAAGACCCGGAATTCAGAACGACGCAATCAGGCGTGGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATAAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTTGCAGGTGTAGATGGCCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTATATTCGTTACAGAAGTTGTGTGCGATAGTGTGCAATTTTTAGAGCCTAAATC
TAATGGTCAATCGAACAGTCAAGCTAAACAACAACAAAGGCAGGACAATCCGTTTGATAACAGTGACTTTGATGACTCGT
CACTCCCGTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.963

78.102

0.562
  ssb Latilactobacillus sakei subsp. sakei 23K

58.879

78.102

0.46
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

77.372

0.445
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

100

0.409
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40

100

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

40

100

0.409
  ssbB/cilA Streptococcus pneumoniae Rx1

39.286

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

39.286

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

39.286

100

0.401
  ssbB/cilA Streptococcus mitis SK321

39.286

100

0.401
  ssbA Streptococcus mutans UA159

37.956

100

0.38