NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	STRR_RS08690	Genome accession	NZ_CP065788
Coordinates	1679011..1679403 (-)	Length	130 a.a.
NCBI ID	WP_011227579.1	Uniprot ID	A0A2S4DWC9
Organism	Streptococcus thermophilus strain RR
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1674011..1684403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STRR_RS08655 (STRR_08585)	dapD	1674313..1675011 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
STRR_RS08660 (STRR_08590)	-	1675097..1675851 (-)	755	Protein_1662	HAD family hydrolase	-
STRR_RS08665 (STRR_08595)	-	1675966..1676799 (-)	834	WP_071417487.1	putative RNA methyltransferase	-
STRR_RS08675 (STRR_08605)	-	1677168..1677335 (+)	168	WP_071417488.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
STRR_RS08680	-	1677388..1677651 (+)	264	WP_014608734.1	hypothetical protein	-
STRR_RS08685 (STRR_08610)	tadA	1677733..1678251 (-)	519	WP_014608735.1	tRNA adenosine(34) deaminase TadA	-
STRR_RS08690 (STRR_08615)	ssbA	1679011..1679403 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
STRR_RS08695 (STRR_08620)	-	1679608..1679835 (-)	228	WP_064355726.1	sulfurtransferase TusA family protein	-
STRR_RS08700 (STRR_08625)	-	1679850..1680881 (-)	1032	WP_071417489.1	YeeE/YedE family protein	-
STRR_RS08705 (STRR_08630)	ytpR	1681019..1681642 (-)	624	WP_071417490.1	YtpR family tRNA-binding protein	-
STRR_RS08710 (STRR_08635)	-	1681652..1681966 (-)	315	WP_002945230.1	thioredoxin family protein	-
STRR_RS08715 (STRR_08640)	-	1681963..1682247 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
STRR_RS08720 (STRR_08645)	pepA	1682347..1683414 (+)	1068	WP_002952022.1	glutamyl aminopeptidase	-
STRR_RS08725 (STRR_08650)	proC	1683430..1684200 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

Download Length: 130 a.a. Molecular weight: 14773.70 Da Isoelectric Point: 5.9275

                                >NTDB_id=514341 STRR_RS08690 WP_011227579.1 1679011..1679403(-) (ssbA) [Streptococcus thermophilus strain RR]

MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR

KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

Download Length: 393 bp

                                >NTDB_id=514341 STRR_RS08690 WP_011227579.1 1679011..1679403(-) (ssbA) [Streptococcus thermophilus strain RR]

ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC

ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT

GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT

AAGTACGATAAGGATGGCCAAACCCATTACGTTACTGAGGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA

GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2S4DWC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385

Detailed information NTG0514341