Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6G67_RS15315 Genome accession   NZ_CP065666
Coordinates   3081043..3082269 (+) Length   408 a.a.
NCBI ID   WP_004692713.1    Uniprot ID   A0A1T1JPM5
Organism   Acinetobacter johnsonii strain FDAARGOS_910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3076043..3087269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G67_RS15270 (I6G67_15270) rimP 3076403..3076927 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  I6G67_RS15300 (I6G67_15300) secG 3077886..3078215 (-) 330 WP_004692710.1 preprotein translocase subunit SecG -
  I6G67_RS15305 (I6G67_15305) tpiA 3078229..3079020 (-) 792 WP_004692711.1 triose-phosphate isomerase -
  I6G67_RS15310 (I6G67_15310) pilB 3079300..3081012 (+) 1713 WP_004692712.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6G67_RS15315 (I6G67_15315) pilC 3081043..3082269 (+) 1227 WP_004692713.1 type II secretion system F family protein Machinery gene
  I6G67_RS15320 (I6G67_15320) pilD 3082269..3083129 (+) 861 WP_004692714.1 A24 family peptidase Machinery gene
  I6G67_RS15325 (I6G67_15325) coaE 3083136..3083735 (+) 600 WP_004692715.1 dephospho-CoA kinase -
  I6G67_RS15330 (I6G67_15330) - 3083749..3084666 (-) 918 WP_004692716.1 DMT family transporter -
  I6G67_RS15335 (I6G67_15335) rlmB 3084699..3085448 (-) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  I6G67_RS15340 (I6G67_15340) - 3085591..3085914 (-) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44818.28 Da        Isoelectric Point: 9.8660

>NTDB_id=512799 I6G67_RS15315 WP_004692713.1 3081043..3082269(+) (pilC) [Acinetobacter johnsonii strain FDAARGOS_910]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=512799 I6G67_RS15315 WP_004692713.1 3081043..3082269(+) (pilC) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATAATGAAGAAAAAAGTGACGACACTAGACATCACGATTTTCACTCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCGCTGGTTCAAGGCTTTGAAATTGTGGCTGAAGGCCTAGAAAACCCATCTATGCGTGAAGT
TGTCCTCGGTATTAAAGGTGAAGTTGAAGGTGGTAATACCTTTGCCGGAGCACTCAAAAAATATCCGCAATATTTTGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGATCGTGTGGCGGTCTATAAA
GAAAAAAGTGAATTGTTAAAGCAAAAAATTAAAAAAGCCATGAAGTACCCAGCAACCGTGGTTGTGGTTGCGGTGATCGT
GACCATTATTTTGATGGTCAAAGTTGTCCCTGTGTTCCAAGATTTATTCAGCTCCTTTGGTGCGGATTTACCTGCATTCA
CTAAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTTGTGATTACC
GCTTTACTTGAAACCAAAAAGCGCAGTAAAAAGTTTCGTGACATGCTGGATAAAGCCGCGCTGAAAGCCCCAATTTTCGG
TGATTTAGTCTATAAAGCAATTATCGCGCGCTATAGTCGCACCCTGTCTACAACCTTTGCTGCGGGTGTGCCCTTAATTG
ATGCCCTAGAGTCTACCGCAGGTGCAACCAACAATGTGGTCTATGAAGAAGCCGTGATGAAAATCCGTGAAGATGTCGCA
ACAGGACAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCAGTACAAATGGTAGCCATTGGTGA
AGAGTCTGGTGCACTCGATGCGATGCTGGATAAAGTTGCAACTCACTATGAAAATGAAGTCGATAATGCGGTGGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T1JPM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

61.728

99.265

0.613
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.417
  pilC Thermus thermophilus HB27

36.908

98.284

0.363