Detailed information NTG0512800

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6G67_RS15320
• Genome accession: NZ_CP065666
• Coordinates: 3082269..3083129 (+)
• Length: 286 a.a.
• NCBI ID: WP_004692714.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain FDAARGOS_910
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3077269..3088129

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G67_RS15300 (I6G67_15300)	secG	3077886..3078215 (-)	330	WP_004692710.1	preprotein translocase subunit SecG	-
I6G67_RS15305 (I6G67_15305)	tpiA	3078229..3079020 (-)	792	WP_004692711.1	triose-phosphate isomerase	-
I6G67_RS15310 (I6G67_15310)	pilB	3079300..3081012 (+)	1713	WP_004692712.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6G67_RS15315 (I6G67_15315)	pilC	3081043..3082269 (+)	1227	WP_004692713.1	type II secretion system F family protein	Machinery gene
I6G67_RS15320 (I6G67_15320)	pilD	3082269..3083129 (+)	861	WP_004692714.1	A24 family peptidase	Machinery gene
I6G67_RS15325 (I6G67_15325)	coaE	3083136..3083735 (+)	600	WP_004692715.1	dephospho-CoA kinase	-
I6G67_RS15330 (I6G67_15330)	-	3083749..3084666 (-)	918	WP_004692716.1	DMT family transporter	-
I6G67_RS15335 (I6G67_15335)	rlmB	3084699..3085448 (-)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
I6G67_RS15340 (I6G67_15340)	-	3085591..3085914 (-)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
I6G67_RS15345 (I6G67_15345)	recN	3086306..3087967 (+)	1662	WP_004692719.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32004.39 Da
• Isoelectric Point: 8.0620

>NTDB_id=512800 I6G67_RS15320 WP_004692714.1 3082269..3083129(+) (pilD) [Acinetobacter johnsonii strain FDAARGOS_910]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPKCKSA
IHWYQNIPVMSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAGLGLGINSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLFTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=512800 I6G67_RS15320 WP_004692714.1 3082269..3083129(+) (pilD) [Acinetobacter johnsonii strain FDAARGOS_910]
ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTGTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATTGG
TAGTTTCCTGAATGTAGTGATCTATCGCACTCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAGCAGCCAATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCAACCTGTCCCAAATGCAAAAGTGCC
ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTCCTGCTACGAGGAAAGTGTGGTACTTGCCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACGATCCAAA
TGCTGTTCGGTCTCGTACTCACGTACATTTTAATCGCCTTAACCTTTATTGATTTTGACACTCAACTTTTACCTGATCGT
TATACCCTCACCCTTGCAGGTCTAGGTTTAGGTATCAATAGTTATGCGATTTACACCACGCCGACAGCGGCCATTTGGGG
CTATATCATTGGCTTTTTATGCTTATGGATCGTGTACTATCTGTTTAAGCTCTTCACAGGCAAGGAAGGTATGGGTTATG
GCGACTTTAAGTTACTTGCTGCTTTAGGCGCGTGGATGGGGCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCTTCTTTC
GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGCCCATATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGTGAGCAAATTATGAAAATTTACTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	78.947	99.65	0.787
pilD	Acinetobacter nosocomialis M2	78.947	99.65	0.787
pilD	Vibrio cholerae strain A1552	53.731	93.706	0.503
pilD	Vibrio campbellii strain DS40M4	51.504	93.007	0.479
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434