Detailed information NTG0512645

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: I6G73_RS21715
• Genome accession: NZ_CP065651
• Coordinates: 4689543..4690784 (+)
• Length: 413 a.a.
• NCBI ID: WP_045525683.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain FDAARGOS_916
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4684543..4695784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G73_RS21690 (I6G73_21690)	ampD	4684910..4685482 (-)	573	WP_045525676.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
I6G73_RS21695 (I6G73_21695)	-	4685630..4686100 (+)	471	WP_024944772.1	TIGR02281 family clan AA aspartic protease	-
I6G73_RS21700 (I6G73_21700)	nadC	4686106..4686963 (+)	858	WP_045525678.1	carboxylating nicotinate-nucleotide diphosphorylase	-
I6G73_RS21705 (I6G73_21705)	-	4687286..4687717 (+)	432	WP_106551646.1	pilin	-
I6G73_RS21710 (I6G73_21710)	pilB	4687721..4689427 (+)	1707	WP_045525681.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6G73_RS21715 (I6G73_21715)	pilC	4689543..4690784 (+)	1242	WP_045525683.1	type II secretion system F family protein	Machinery gene
I6G73_RS21720 (I6G73_21720)	pilD	4690807..4691679 (+)	873	WP_045525685.1	prepilin peptidase	Machinery gene
I6G73_RS21725 (I6G73_21725)	coaE	4691699..4692313 (+)	615	WP_045525686.1	dephospho-CoA kinase	-
I6G73_RS21730 (I6G73_21730)	zapD	4692351..4693073 (+)	723	WP_024945431.1	cell division protein ZapD	-
I6G73_RS21735 (I6G73_21735)	yacG	4693083..4693277 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
I6G73_RS21740 (I6G73_21740)	mutT	4693338..4693751 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
I6G73_RS21745 (I6G73_21745)	-	4693760..4694944 (-)	1185	WP_045525689.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 45433.56 Da
• Isoelectric Point: 9.8638

>NTDB_id=512645 I6G73_RS21715 WP_045525683.1 4689543..4690784(+) (pilC) [Aeromonas hydrophila strain FDAARGOS_916]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSTNTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQHWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide

• Length: 1242 bp

>NTDB_id=512645 I6G73_RS21715 WP_045525683.1 4689543..4690784(+) (pilC) [Aeromonas hydrophila strain FDAARGOS_916]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCTTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCACCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAAATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACGCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCACTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGACATCTTCAAGAGCTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGTATCTCCCGCTTCATGCAACACTGGTGGTATGTGATCTTCGGTGGCATAGCG
CTCGCCATCTTTCTCTATGTGCGTGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATATTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGTACCCTCTCCACTACCTTCTCCGCCGGTA
TTCCACTGGTGGATGCCTTGGTCTCTGCGGCAGGCGCCTCTGGCAACTATGTCTATCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAAGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGTTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (79-201)

• Type II secretion system (T2SS), protein F (T2SSF) (282-404)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.323	95.884	0.55
pilC	Acinetobacter baumannii D1279779	54	96.852	0.523
pilC	Legionella pneumophila strain ERS1305867	51.358	98.063	0.504
pilC	Acinetobacter baylyi ADP1	52.141	96.126	0.501
pilC	Vibrio cholerae strain A1552	47.739	96.368	0.46
pilC	Vibrio campbellii strain DS40M4	46.096	96.126	0.443
pilG	Neisseria gonorrhoeae MS11	40.247	98.063	0.395
pilG	Neisseria meningitidis 44/76-A	40	98.063	0.392
pilC	Thermus thermophilus HB27	37.75	96.852	0.366