Detailed information NTG0512646

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6G73_RS21720
• Genome accession: NZ_CP065651
• Coordinates: 4690807..4691679 (+)
• Length: 290 a.a.
• NCBI ID: WP_045525685.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain FDAARGOS_916
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4685807..4696679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G73_RS21700 (I6G73_21700)	nadC	4686106..4686963 (+)	858	WP_045525678.1	carboxylating nicotinate-nucleotide diphosphorylase	-
I6G73_RS21705 (I6G73_21705)	-	4687286..4687717 (+)	432	WP_106551646.1	pilin	-
I6G73_RS21710 (I6G73_21710)	pilB	4687721..4689427 (+)	1707	WP_045525681.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
I6G73_RS21715 (I6G73_21715)	pilC	4689543..4690784 (+)	1242	WP_045525683.1	type II secretion system F family protein	Machinery gene
I6G73_RS21720 (I6G73_21720)	pilD	4690807..4691679 (+)	873	WP_045525685.1	prepilin peptidase	Machinery gene
I6G73_RS21725 (I6G73_21725)	coaE	4691699..4692313 (+)	615	WP_045525686.1	dephospho-CoA kinase	-
I6G73_RS21730 (I6G73_21730)	zapD	4692351..4693073 (+)	723	WP_024945431.1	cell division protein ZapD	-
I6G73_RS21735 (I6G73_21735)	yacG	4693083..4693277 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
I6G73_RS21740 (I6G73_21740)	mutT	4693338..4693751 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
I6G73_RS21745 (I6G73_21745)	-	4693760..4694944 (-)	1185	WP_045525689.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32408.71 Da
• Isoelectric Point: 6.4795

>NTDB_id=512646 I6G73_RS21720 WP_045525685.1 4690807..4691679(+) (pilD) [Aeromonas hydrophila strain FDAARGOS_916]
MLIITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETLPQQEEPYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRACQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNNPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=512646 I6G73_RS21720 WP_045525685.1 4690807..4691679(+) (pilD) [Aeromonas hydrophila strain FDAARGOS_916]
ATGTTGATTATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTACTTCTCGCTGGTATTTCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACTGCCGCAGCAGGAAGAGCCCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCCCATTGCGGCCACGCC
ATCACAGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGCATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCACTGGTCGTCGCAGCAACATACCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGTTGCTCACTTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGTCTGCTGTTCAATCTGACAGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCACTGCCCATCGTATTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAACCCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCACTGTTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	55.245	98.621	0.545
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	49.451	94.138	0.466