Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   I6G96_RS02280 Genome accession   NZ_CP065627
Coordinates   502364..503581 (+) Length   405 a.a.
NCBI ID   WP_065345744.1    Uniprot ID   -
Organism   Delftia acidovorans strain FDAARGOS_939     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497364..508581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G96_RS02255 (I6G96_02255) rpmA 498598..498855 (-) 258 WP_012207283.1 50S ribosomal protein L27 -
  I6G96_RS02260 (I6G96_02260) rplU 498871..499182 (-) 312 WP_012207284.1 50S ribosomal protein L21 -
  I6G96_RS02265 (I6G96_02265) - 499413..500342 (+) 930 WP_034396917.1 polyprenyl synthetase family protein -
  I6G96_RS02275 (I6G96_02275) pilB 500583..502325 (+) 1743 WP_197944164.1 type IV-A pilus assembly ATPase PilB Machinery gene
  I6G96_RS02280 (I6G96_02280) pilC 502364..503581 (+) 1218 WP_065345744.1 type II secretion system F family protein Machinery gene
  I6G96_RS02285 (I6G96_02285) pilD 503581..504468 (+) 888 WP_197944165.1 prepilin peptidase Machinery gene
  I6G96_RS02290 (I6G96_02290) coaE 504483..505127 (+) 645 WP_197944166.1 dephospho-CoA kinase -
  I6G96_RS02295 (I6G96_02295) zapD 505217..505972 (+) 756 WP_096913920.1 cell division protein ZapD -
  I6G96_RS02300 (I6G96_02300) yacG 505972..506220 (+) 249 WP_414017743.1 DNA gyrase inhibitor YacG -
  I6G96_RS02305 (I6G96_02305) - 506231..506749 (-) 519 WP_197944168.1 NUDIX domain-containing protein -
  I6G96_RS02310 (I6G96_02310) - 506800..507756 (-) 957 WP_197944169.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44468.26 Da        Isoelectric Point: 9.3922

>NTDB_id=512279 I6G96_RS02280 WP_065345744.1 502364..503581(+) (pilC) [Delftia acidovorans strain FDAARGOS_939]
MATAASKGIKDFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRSDVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVVVVAFIVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMGISDIFVQWWWVIFGVIGGGFYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=512279 I6G96_RS02280 WP_065345744.1 502364..503581(+) (pilC) [Delftia acidovorans strain FDAARGOS_939]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGACTTTGTCTTCGAGTGGGAAGGCAAGGATCGCAACGGCAAGATCATTCG
AGGCGAAACCCGGGCCGGAGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTCCCCAGCAAGATCAAGA
AGCGCCGTACGCGCGGTGGCAAAAGAATCAAACCCAAGGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCTGGTGTCCCGCTGCTGCAGGCGTTCGACATCGTCGGGCGCGGCAACACCAACCCCAGTGTCACGCGCCTGCTGGCCGA
TATCCGCTCCGACGTGGAGACTGGCACCTCGCTGAATGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCCGGGGAAGCGGCCGGTATCCTGGAGGCCCTGCTCGATCGGCTGGCCACCTATATGGAAAAAACC
GAGGCCATCAAGTCCAAGATCAAGTCCGCCTTGATGTATCCGATCTCGGTGGTCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATCTTCGTGATTCCTGCCTTCAAGGAAGTGTTCACCTCCTTCGGCGCGGATCTGCCGGCACCGACGCTGTTCG
TGATGGGTATCAGCGACATCTTTGTCCAATGGTGGTGGGTGATCTTCGGCGTGATCGGAGGCGGCTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGCACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAAAAGTCCTGCGTTGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCCGCGGGCGTCCCATTGGTTGAGGCACTGG
ATTCCGTCGGCGGCGCCTCCGGGAATGCCGTCTACGCCAATGCCACCGAGAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGCCTCACGGTGGCCATGACCAATGCCAACGTCTTTCCCTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTTGGCAAGGCGGCCGATTTCTACGAGGAGGAGGTCGATGACATGGTGGCTGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGCCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.693

99.753

0.556
  pilG Neisseria gonorrhoeae MS11

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50

98.272

0.491
  pilG Neisseria meningitidis 44/76-A

49.75

98.765

0.491
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

47.607

98.025

0.467
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.75

98.765

0.393
  pilC Thermus thermophilus HB27

37.093

98.519

0.365