Detailed information NTG0512280

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: I6G96_RS02285
• Genome accession: NZ_CP065627
• Coordinates: 503581..504468 (+)
• Length: 295 a.a.
• NCBI ID: WP_197944165.1
• Uniprot ID: -
• Organism: Delftia acidovorans strain FDAARGOS_939
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 498581..509468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6G96_RS02255 (I6G96_02255)	rpmA	498598..498855 (-)	258	WP_012207283.1	50S ribosomal protein L27	-
I6G96_RS02260 (I6G96_02260)	rplU	498871..499182 (-)	312	WP_012207284.1	50S ribosomal protein L21	-
I6G96_RS02265 (I6G96_02265)	-	499413..500342 (+)	930	WP_034396917.1	polyprenyl synthetase family protein	-
I6G96_RS02275 (I6G96_02275)	pilB	500583..502325 (+)	1743	WP_197944164.1	type IV-A pilus assembly ATPase PilB	Machinery gene
I6G96_RS02280 (I6G96_02280)	pilC	502364..503581 (+)	1218	WP_065345744.1	type II secretion system F family protein	Machinery gene
I6G96_RS02285 (I6G96_02285)	pilD	503581..504468 (+)	888	WP_197944165.1	prepilin peptidase	Machinery gene
I6G96_RS02290 (I6G96_02290)	coaE	504483..505127 (+)	645	WP_197944166.1	dephospho-CoA kinase	-
I6G96_RS02295 (I6G96_02295)	zapD	505217..505972 (+)	756	WP_096913920.1	cell division protein ZapD	-
I6G96_RS02300 (I6G96_02300)	yacG	505972..506220 (+)	249	WP_414017743.1	DNA gyrase inhibitor YacG	-
I6G96_RS02305 (I6G96_02305)	-	506231..506749 (-)	519	WP_197944168.1	NUDIX domain-containing protein	-
I6G96_RS02310 (I6G96_02310)	-	506800..507756 (-)	957	WP_197944169.1	ATP-binding protein	-
I6G96_RS02315 (I6G96_02315)	argJ	507922..509154 (-)	1233	WP_197944170.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 31722.31 Da
• Isoelectric Point: 6.6130

>NTDB_id=512280 I6G96_RS02285 WP_197944165.1 503581..504468(+) (pilD) [Delftia acidovorans strain FDAARGOS_939]
MPLDPWIQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSGAAPPSAAAPDLAEAPLSLSRPRSRCPHCG
HAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCTMQWGITPTGAIWCLFSAALLSLALIDWDTTLLP
DDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLVTGKEGMGYGDFKLFAALGAWFGWQALVPIILI
SSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAAIGL

Nucleotide

• Length: 888 bp

>NTDB_id=512280 I6G96_RS02285 WP_197944165.1 503581..504468(+) (pilD) [Delftia acidovorans strain FDAARGOS_939]
ATGCCCTTGGATCCCTGGATTCAGGCCGCGTTGGGCGGCCTGCTGGGCCTGCTGGTCGGCAGCTTTCTCAACGTGGTGGT
GCACAGGCTGCCACGCATGATGGAACAGCAATGGAATGCGGAATGCGCCCAATGGGCACAGGAGCAATCCGGCGCCGCAC
CTCCCTCTGCTGCTGCGCCTGACCTTGCCGAGGCCCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCATTGCGGC
CATGCCATCCACTGGTACGAGAACATTCCCGTGCTCAGCTATCTGGCGCTGCGGGGCCGGTGCTCGGAATGCAAGGCATC
GATCAGCATCCGCTACCCGCTGGTGGAACTGGCCTGCGCTGCGCTATTCGCCTACTGCACGATGCAATGGGGCATCACGC
CCACGGGCGCCATCTGGTGCCTGTTCAGCGCCGCCTTGCTGAGCCTGGCGTTGATCGACTGGGATACCACACTGCTCCCC
GATGACATCACCCTGCCCTTGCTGTGGGCCGGGCTGCTTTCATCGGCACTGCACTGGACCGCCGTGCCTCTGGCCGACGC
GGTCTGGGGTGCCGCAGCGGGCTATCTTTCGCTGTGGCTGGTCTACTGGGCCTTCAAGCTGGTCACCGGCAAGGAAGGCA
TGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGGGCCTGGTTCGGCTGGCAGGCTCTTGTGCCCATCATCCTGATC
TCGTCCGTGATTGGCGCCATCGTGGGCATTGCGCTGAAGATCAACAGCCGCCTGCGCGAAGGTGGCTATGTTCCCTTTGG
CCCCTTTCTTGCGGGAGCCGGCTTTGCCGCCATGGTGTTCGGACCCCAGCAGATGCTGCAATCCCTGTTGGCGGCCATCG
GTCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (141-250)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.418	95.593	0.492
pilD	Vibrio campbellii strain DS40M4	47.143	94.915	0.447
pilD	Neisseria gonorrhoeae MS11	46.816	90.508	0.424
pilD	Acinetobacter nosocomialis M2	45.055	92.542	0.417
pilD	Acinetobacter baumannii D1279779	44.689	92.542	0.414