Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | M892_RS05925 | Genome accession | NC_022269 |
| Coordinates | 1285804..1286091 (-) | Length | 95 a.a. |
| NCBI ID | WP_012127312.1 | Uniprot ID | A0ABY5IEZ8 |
| Organism | Vibrio campbellii ATCC BAA-1116 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1280804..1291091
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M892_RS05900 (M892_05910) | - | 1281244..1282458 (+) | 1215 | WP_012127317.1 | pyridoxal phosphate-dependent aminotransferase | - |
| M892_RS05905 (M892_05915) | yfbR | 1282543..1283127 (+) | 585 | WP_041853219.1 | 5'-deoxynucleotidase | - |
| M892_RS05910 (M892_05920) | - | 1283131..1284465 (+) | 1335 | WP_012127315.1 | anti-phage deoxyguanosine triphosphatase | - |
| M892_RS05915 (M892_05925) | - | 1284485..1285102 (-) | 618 | WP_021017860.1 | DTW domain-containing protein | - |
| M892_RS05920 (M892_05930) | rrtA | 1285106..1285657 (+) | 552 | WP_021017861.1 | rhombosortase | - |
| M892_RS05925 (M892_05935) | comEA | 1285804..1286091 (-) | 288 | WP_012127312.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| M892_RS05930 (M892_05940) | ppiD | 1286237..1288096 (-) | 1860 | WP_012127311.1 | peptidylprolyl isomerase | - |
| M892_RS05935 (M892_05945) | - | 1288311..1288583 (-) | 273 | WP_012127310.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 10533.26 Da Isoelectric Point: 6.9799
>NTDB_id=51188 M892_RS05925 WP_012127312.1 1285804..1286091(-) (comEA) [Vibrio campbellii ATCC BAA-1116]
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAQEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
MKWMLTLCLLILAPMSWAETKTKADKYEGIEITVNVNSATAQEIATLLNGIGEKKAQDIVEYRNEHGPFKTAADLTKVKG
IGEATVKKNEDRILL
Nucleotide
Download Length: 288 bp
>NTDB_id=51188 M892_RS05925 WP_012127312.1 1285804..1286091(-) (comEA) [Vibrio campbellii ATCC BAA-1116]
ATGAAATGGATGTTAACACTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCGGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCACAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGCCCATTTAAAACCGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAAGAAGAACGAAGACCGCATCCTGCTGTAA
ATGAAATGGATGTTAACACTGTGCTTATTGATACTCGCGCCGATGAGCTGGGCGGAAACAAAGACTAAAGCGGATAAGTA
TGAAGGTATTGAGATTACGGTTAACGTTAACTCTGCCACTGCACAAGAGATTGCGACGCTACTTAATGGTATTGGTGAGA
AGAAAGCGCAAGATATTGTTGAGTATCGCAACGAGCACGGCCCATTTAAAACCGCTGCGGATCTTACAAAGGTGAAAGGC
ATCGGTGAGGCGACTGTGAAGAAGAACGAAGACCGCATCCTGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio campbellii strain DS40M4 |
97.895 |
100 |
0.979 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
78.947 |
100 |
0.789 |
| comEA | Vibrio cholerae C6706 |
57.292 |
100 |
0.579 |
| comEA | Vibrio cholerae strain A1552 |
57.292 |
100 |
0.579 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.286 |
100 |
0.463 |
| comEA | Acinetobacter baumannii strain A118 |
32.787 |
100 |
0.421 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comE | Neisseria gonorrhoeae MS11 |
40.86 |
97.895 |
0.4 |
| comEA | Acinetobacter baylyi ADP1 |
48.649 |
77.895 |
0.379 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
56.452 |
65.263 |
0.368 |