Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   STAVA116_RS08275 Genome accession   NZ_CP065498
Coordinates   1601255..1602196 (-) Length   313 a.a.
NCBI ID   WP_022096896.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain AVA116     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1596255..1607196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS08235 (STAVA116_08185) - 1596331..1597524 (-) 1194 WP_087010197.1 acetate kinase -
  STAVA116_RS08240 (STAVA116_08190) comYH 1597580..1598536 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STAVA116_RS08245 (STAVA116_08195) comGG 1598581..1598898 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STAVA116_RS08250 (STAVA116_08200) comYF 1598876..1599313 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  STAVA116_RS08255 (STAVA116_08205) comGE 1599297..1599590 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STAVA116_RS08260 (STAVA116_08210) comYD 1599562..1599990 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STAVA116_RS08265 (STAVA116_08215) comYC 1599950..1600276 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STAVA116_RS08270 (STAVA116_08220) comYB 1600273..1601373 (-) 1101 WP_157659050.1 competence type IV pilus assembly protein ComGB Machinery gene
  STAVA116_RS08275 (STAVA116_08225) comGA/cglA/cilD 1601255..1602196 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STAVA116_RS08280 (STAVA116_08230) - 1602277..1602639 (-) 363 WP_087010198.1 DUF1033 family protein -
  STAVA116_RS08285 (STAVA116_08235) rpoC 1602798..1606436 (-) 3639 WP_087010199.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35409.56 Da        Isoelectric Point: 6.3927

>NTDB_id=511165 STAVA116_RS08275 WP_022096896.1 1601255..1602196(-) (comGA/cglA/cilD) [Streptococcus thermophilus strain AVA116]
MVTEFAKEMIKNADSCGAQDIYVIPRQDNYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGHLVSLRLSTVGDYRGLESLVIRILHSERRELVYWNQGIQPIKDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDSLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVTVLSTIHAKSIAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGVIDFARENFQNHSSTNWNQQLEGLVKQGCLTERDIQGEKIKD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=511165 STAVA116_RS08275 WP_022096896.1 1601255..1602196(-) (comGA/cglA/cilD) [Streptococcus thermophilus strain AVA116]
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGATAATTATGAGCTCTATATGCGAGTCGGGCAAGAGAGGAGATTGATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTGGGTTCATGTGACTATGAT
TGTGGTGACGGTCACTTGGTTTCTCTGCGTTTATCAACTGTTGGAGACTATCGAGGTTTGGAGAGCTTGGTTATCCGTAT
CCTACATTCCGAACGTCGAGAATTAGTGTATTGGAATCAAGGAATCCAGCCTATTAAGGATGCCTTGGATTATAGAGGAC
TGTATCTCTTTGCGGGTCCCGTAGGTTCTGGGAAGACCACACTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTAATTTCTATTGAGGATCCTGTTGAAATCAAACAGGATAATGTCTTGCAACTCCAGGTTAATCAGGCGATTGATAT
GACCTATGATAGTTTGATTAAGCTATCTCTACGTCACCGTCCAGATGTTTTGATTATTGGGGAGATTCGGGATAAGGAGA
CTGCCCGGGCAGTTATTAGAGCTAGTCTAACAGGTGTAACTGTTCTCTCAACTATTCATGCTAAGAGTATTGCTGGCGTT
TACGAACGTCTCTTGGACCTTGGTGTAGATAAGTCTGAGTTGGATAATGCTCTACAAGGCATTGCCTACATGCGTTTGAT
CAAGGGAGGAGGTGTGATTGATTTTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAG
GTTTGGTTAAACAAGGATGTCTCACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.595

99.361

0.652
  comYA Streptococcus mutans UA159

64.856

100

0.649
  comYA Streptococcus mutans UA140

64.856

100

0.649
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.309

99.361

0.639
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.309

99.361

0.639
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.309

99.361

0.639
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.309

99.361

0.639
  comYA Streptococcus gordonii str. Challis substr. CH1

63.259

100

0.633
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.538

99.681

0.613
  comGA Lactococcus lactis subsp. cremoris KW2

51.125

99.361

0.508
  comGA Latilactobacillus sakei subsp. sakei 23K

38.816

97.125

0.377