Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STAVA116_RS08240 Genome accession   NZ_CP065498
Coordinates   1597580..1598536 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain AVA116     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592580..1603536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAVA116_RS08210 (STAVA116_08160) proC 1593130..1593900 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STAVA116_RS08215 (STAVA116_08165) - 1593930..1594592 (-) 663 WP_087010194.1 type II CAAX endopeptidase family protein -
  STAVA116_RS08220 (STAVA116_08170) - 1594695..1595138 (-) 444 WP_087010195.1 CAAX protease -
  STAVA116_RS08225 - 1595212..1595637 (-) 426 WP_087010196.1 CPBP family intramembrane glutamic endopeptidase -
  STAVA116_RS08230 (STAVA116_08180) - 1595885..1596082 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  STAVA116_RS08235 (STAVA116_08185) - 1596331..1597524 (-) 1194 WP_087010197.1 acetate kinase -
  STAVA116_RS08240 (STAVA116_08190) comYH 1597580..1598536 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STAVA116_RS08245 (STAVA116_08195) comGG 1598581..1598898 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STAVA116_RS08250 (STAVA116_08200) comYF 1598876..1599313 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  STAVA116_RS08255 (STAVA116_08205) comGE 1599297..1599590 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STAVA116_RS08260 (STAVA116_08210) comYD 1599562..1599990 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STAVA116_RS08265 (STAVA116_08215) comYC 1599950..1600276 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STAVA116_RS08270 (STAVA116_08220) comYB 1600273..1601373 (-) 1101 WP_157659050.1 competence type IV pilus assembly protein ComGB Machinery gene
  STAVA116_RS08275 (STAVA116_08225) comGA/cglA/cilD 1601255..1602196 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  STAVA116_RS08280 (STAVA116_08230) - 1602277..1602639 (-) 363 WP_087010198.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=511160 STAVA116_RS08240 WP_011226622.1 1597580..1598536(-) (comYH) [Streptococcus thermophilus strain AVA116]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=511160 STAVA116_RS08240 WP_011226622.1 1597580..1598536(-) (comYH) [Streptococcus thermophilus strain AVA116]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGTCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682