Detailed information NTG0511158

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: STAVA116_RS08175
• Genome accession: NZ_CP065498
• Coordinates: 1588714..1589106 (-)
• Length: 130 a.a.
• NCBI ID: WP_011226610.1
• Uniprot ID: A0A3G6K2H6
• Organism: Streptococcus thermophilus strain AVA116
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1583714..1594106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA116_RS08140 (STAVA116_08095)	dapD	1584017..1584715 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
STAVA116_RS08145 (STAVA116_08100)	-	1584801..1585555 (-)	755	Protein_1559	HAD family hydrolase	-
STAVA116_RS08150 (STAVA116_08105)	-	1585670..1586503 (-)	834	WP_011681672.1	putative RNA methyltransferase	-
STAVA116_RS08160 (STAVA116_08115)	-	1586872..1587039 (+)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
STAVA116_RS08165	-	1587092..1587354 (+)	263	Protein_1562	hypothetical protein	-
STAVA116_RS08170 (STAVA116_08120)	tadA	1587435..1587953 (-)	519	WP_087010191.1	tRNA adenosine(34) deaminase TadA	-
STAVA116_RS08175 (STAVA116_08125)	ssbA	1588714..1589106 (-)	393	WP_011226610.1	single-stranded DNA-binding protein	Machinery gene
STAVA116_RS08180 (STAVA116_08130)	-	1589312..1589539 (-)	228	WP_064355726.1	sulfurtransferase TusA family protein	-
STAVA116_RS08185 (STAVA116_08135)	-	1589554..1590585 (-)	1032	WP_087010192.1	YeeE/YedE family protein	-
STAVA116_RS08190 (STAVA116_08140)	ytpR	1590719..1591342 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
STAVA116_RS08195 (STAVA116_08145)	-	1591352..1591666 (-)	315	WP_002945230.1	thioredoxin family protein	-
STAVA116_RS08200 (STAVA116_08150)	-	1591663..1591947 (-)	285	WP_087010193.1	DUF4651 domain-containing protein	-
STAVA116_RS08205 (STAVA116_08155)	pepA	1592047..1593114 (+)	1068	WP_002952022.1	glutamyl aminopeptidase	-
STAVA116_RS08210 (STAVA116_08160)	proC	1593130..1593900 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=511158 STAVA116_RS08175 WP_011226610.1 1588714..1589106(-) (ssbA) [Streptococcus thermophilus strain AVA116]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=511158 STAVA116_RS08175 WP_011226610.1 1588714..1589106(-) (ssbA) [Streptococcus thermophilus strain AVA116]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A3G6K2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB	Streptococcus sobrinus strain NIDR 6715-7	76.336	100	0.769
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377